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Merge dev into main with new tutorials - #206

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jan-forest merged 23 commits into
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Aug 21, 2026
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jan-forest merged 23 commits into
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alicia01101 and others added 23 commits July 21, 2026 12:00
  example at Hugging Face dataset

  Replaces the manual 8GB zip download with
  hf_hub_download calls
  against autoencodix/tcga for the bulk-sequencing
  example and adds
  huggingface_hub as an explicit dependency

  Ref #171
  Bring in beta-scaling fix (3c01369) for var_loss visualization
Replaces the expired scadsai-nextcloud download links for GSE84133
(Maskix), the TCGA multi-omics + ontology files (Ontix) and the
TCGA + xmodalix image bundle (XModalix) with hf_hub_download calls
against autoencodix/pancreas-fang and autoencodix/tcga.
… into 171-change-example-data-for-inputdatatutorial
 Fix crash on int-coded label columns in ridgeline plot
…nputdatatutorial

Change tutorial data download links from nextcloud to Hugging Face datasets
…rsion in toml to avoid issue in Windows check
@jan-forest
jan-forest merged commit 188a591 into main Aug 21, 2026
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2 participants