Pinned Loading

1. SpatialCellViz SpatialCellViz Public

   A Dockerized R Shiny app for visualization of spatial single-cell data with cell masks

   R 3

2. EwsProject EwsProject Public

   Anaylsis of Fiber-seq, scRNA-seq, and ATAC-seq data from nine Ewing Sarcoma (EwS) tumor cell lines to uncover insights into tumor heterogeneity

   Python 2 1

3. motif-mark motif-mark Public

   motif-mark is a visualization tool for exploring sequence motifs involved in eukaryotic alternative splicing.

   Python

4. Deduper-j0shkramer Deduper-j0shkramer Public

   Reference Based PCR Duplicate Removal tool. given a sam file of uniquely mapped reads, remove all PCR duplicates (retain only a single copy of each read)

   Python

5. Demultiplex Demultiplex Public

   Look through a lane of sequencing generated by the BGMP cohort's library preps and determine the level of index swapping and undetermined index-pairs.

   Python

6. PhylogenyBenchmarking PhylogenyBenchmarking Public

   Creating neighbor-joining and degenerate triples algorithms for creating phylogenetic trees for benchmarking performance

   Python