fix(proof): preserve complete goals and require live Isabelle controls

.machine_readable/bot_directives/coverage.a2ml → .bot_directives/coverage.a2ml

@@ -8,6 +8,7 @@
 # Reference: ADR-002 in standards/agentic-a2ml/docs/
 
 [metadata]
+project = "proof-burrower"
 version = "1.0.0"
 last-updated = "2026-04-26"
 

.machine_readable/bot_directives/debt.a2ml → .bot_directives/debt.a2ml

@@ -8,6 +8,7 @@
 # Reference: ADR-002 in standards/agentic-a2ml/docs/
 
 [metadata]
+project = "proof-burrower"
 version = "1.0.0"
 last-updated = "2026-04-26"
 

.machine_readable/bot_directives/methodology.a2ml → .bot_directives/methodology.a2ml

@@ -8,6 +8,7 @@
 # Reference: ADR-002 in standards/agentic-a2ml/docs/
 
 [metadata]
+project = "proof-burrower"
 version = "1.0.0"
 last-updated = "2026-04-26"
 spec = "https://github.com/hyperpolymath/standards/blob/main/agentic-a2ml/docs/ADR-002-methodology-layer.adoc"

.envrc

@@ -20,7 +20,7 @@ fi
 export PROJECT_NAME="Proof Burrower"
 export RSR_TIER="infrastructure"
 # export DATABASE_URL="..."
-# export API_KEY="..."
+# Load credentials through the ignored .env file below.
 
 # Source .env if it exists (gitignored)
 dotenv_if_exists

.github/workflows/actions.lock

@@ -0,0 +1,159 @@
+# This file is machine-generated by `gh actions-lock`.
+# Do not edit by hand; run `gh actions-lock` to update.
+# Docs: https://gh.io/actions-lockfile
+version: 'v0.0.2'
+workflows:
+    '.github/workflows/boj-build.yml':
+        - 'actions/checkout@v6.0.2'
+    '.github/workflows/codeql.yml':
+        - 'actions/checkout@v6.0.2'
+        - 'github/codeql-action@v4.34.0'
+    '.github/workflows/dependabot-automerge.yml':
+        - 'dependabot/fetch-metadata@v2.2.0'
+    '.github/workflows/dogfood-gate.yml':
+        - 'actions/checkout@v4.3.1'
+        - 'hyperpolymath/a2ml-ecosystem@main'
+        - 'hyperpolymath/k9-ecosystem@main'
+    '.github/workflows/guix-nix-policy.yml':
+        - 'actions/checkout@v6.0.2'
+    '.github/workflows/instant-sync.yml':
+        - 'peter-evans/repository-dispatch@v4.0.1'
+    '.github/workflows/main-estate-audit.yml':
+        - 'actions/checkout@v4.4.0'
+        - 'hyperpolymath/cicd-suite@main'
+    '.github/workflows/openssf-compliance.yml':
+        - 'actions/checkout@v4.3.1'
+    '.github/workflows/pages.yml':
+        - 'actions/checkout@v4.4.0'
+        - 'actions/deploy-pages@v4.0.5'
+        - 'actions/upload-pages-artifact@v3.0.1'
+    '.github/workflows/proof-safety.yml':
+        - 'actions/checkout@v7.0.1'
+        - 'swatinem/rust-cache@v2.9.2'
+    '.github/workflows/push-email-notify.yml':
+        - 'hyperpolymath/smtp-notify-action@v0.2.0'
+    '.github/workflows/quality.yml':
+        - 'actions/checkout@v6.0.2'
+        - 'editorconfig-checker/action-editorconfig-checker@v2.1.0'
+    '.github/workflows/release.yml':
+        - 'actions/checkout@v6.0.2'
+        - 'actions/upload-artifact@v4.6.2'
+        - 'softprops/action-gh-release@v2.5.0'
+    '.github/workflows/rhodibot.yml':
+        - 'actions/checkout@v4.3.1'
+    '.github/workflows/runtime-policy.yml':
+        - 'actions/checkout@v6.0.2'
+    '.github/workflows/security-policy.yml':
+        - 'actions/checkout@v6.0.2'
+    '.github/workflows/static-analysis-gate.yml':
+        - 'actions/checkout@v6.0.2'
+        - 'actions/download-artifact@v4.1.8'
+        - 'actions/upload-artifact@v4.6.2'
+        - 'erlef/setup-beam@v1.20.4'
+    '.github/workflows/wellknown-enforcement.yml':
+        - 'actions/checkout@v6.0.2'
+    '.github/workflows/workflow-linter.yml':
+        - 'actions/checkout@v6.0.2'
+dependencies:
+    'actions/checkout@v4.3.1':
+        ref: 'v4.3.1'
+        commit: 'sha1-34e114876b0b11c390a56381ad16ebd13914f8d5'
+        owner_id: 44036562
+        repo_id: 197814629
+    'actions/checkout@v4.4.0':
+        ref: 'v4.4.0'
+        commit: 'sha1-11d5960a326750d5838078e36cf38b85af677262'
+        owner_id: 44036562
+        repo_id: 197814629
+    'actions/checkout@v6.0.2':
+        ref: 'v6.0.2'
+        commit: 'sha1-de0fac2e4500dabe0009e67214ff5f5447ce83dd'
+        owner_id: 44036562
+        repo_id: 197814629
+    'actions/checkout@v7.0.1':
+        ref: 'v7.0.1'
+        commit: 'sha1-3d3c42e5aac5ba805825da76410c181273ba90b1'
+        owner_id: 44036562
+        repo_id: 197814629
+    'actions/deploy-pages@v4.0.5':
+        ref: 'v4.0.5'
+        commit: 'sha1-d6db90164ac5ed86f2b6aed7e0febac5b3c0c03e'
+        owner_id: 44036562
+        repo_id: 438112499
+    'actions/download-artifact@v4.1.8':
+        ref: 'v4.1.8'
+        commit: 'sha1-fa0a91b85d4f404e444e00e005971372dc801d16'
+        owner_id: 44036562
+        repo_id: 192626254
+    'actions/upload-artifact@v4':
+        ref: 'v4'
+        commit: 'sha1-ea165f8d65b6e75b540449e92b4886f43607fa02'
+        owner_id: 44036562
+        repo_id: 192625955
+    'actions/upload-artifact@v4.6.2':
+        ref: 'v4.6.2'
+        commit: 'sha1-ea165f8d65b6e75b540449e92b4886f43607fa02'
+        owner_id: 44036562
+        repo_id: 192625955
+    'actions/upload-pages-artifact@v3.0.1':
+        ref: 'v3.0.1'
+        commit: 'sha1-56afc609e74202658d3ffba0e8f6dda462b719fa'
+        owner_id: 44036562
+        repo_id: 496012378
+        uses:
+            - 'actions/upload-artifact@v4'
+    'dependabot/fetch-metadata@v2.2.0':
+        ref: 'v2.2.0'
+        commit: 'sha1-dbb049abf0d677abbd7f7eee0375145b417fdd34'
+        owner_id: 27347476
+        repo_id: 371068214
+    'editorconfig-checker/action-editorconfig-checker@v2.1.0':
+        ref: 'v2.1.0'
+        commit: 'sha1-4b6cd6190d435e7e084fb35e36a096e98506f7b9'
+        owner_id: 26415196
+        repo_id: 297874902
+    'erlef/setup-beam@v1.20.4':
+        ref: 'v1.20.4'
+        commit: 'sha1-e6d7c94229049569db56a7ad5a540c051a010af9'
+        owner_id: 47606891
+        repo_id: 331103973
+    'github/codeql-action@v4.34.0':
+        ref: 'v4.34.0'
+        commit: 'sha1-c6f931105cb2c34c8f901cc885ba1e2e259cf745'
+        owner_id: 9919
+        repo_id: 259445878
+    'hyperpolymath/a2ml-ecosystem@main':
+        ref: 'main'
+        commit: 'sha1-aa4b836bd969df2bc58128cb8e3d20bbc88d5e79'
+        owner_id: 6759885
+        repo_id: 1275649586
+    'hyperpolymath/cicd-suite@main':
+        ref: 'main'
+        commit: 'sha1-fc64172aa53e85289d5d7d6e15c2435a867cc1c9'
+        owner_id: 6759885
+        repo_id: 1326697643
+    'hyperpolymath/k9-ecosystem@main':
+        ref: 'main'
+        commit: 'sha1-89f3c2702f4f650a92aa7411502f38da06abd562'
+        owner_id: 6759885
+        repo_id: 1275650185
+    'hyperpolymath/smtp-notify-action@v0.2.0':
+        ref: 'v0.2.0'
+        commit: 'sha1-ede1191ef6ff3ac02c4f4d9efdf837ee517e11d7'
+        owner_id: 6759885
+        repo_id: 1352485172
+    'peter-evans/repository-dispatch@v4.0.1':
+        ref: 'v4.0.1'
+        commit: 'sha1-28959ce8df70de7be546dd1250a005dd32156697'
+        owner_id: 18365890
+        repo_id: 220359305
+    'softprops/action-gh-release@v2.5.0':
+        ref: 'v2.5.0'
+        commit: 'sha1-a06a81a03ee405af7f2048a818ed3f03bbf83c7b'
+        owner_id: 2242
+        repo_id: 204253808
+    'swatinem/rust-cache@v2.9.2':
+        ref: 'v2.9.2'
+        commit: 'sha1-6323deb102c322ba6fcbdcafc7e3dddab59af2b6'
+        owner_id: 580492
+        repo_id: 298565987

.github/workflows/boj-build.yml

@@ -1,4 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
+# This workflow is managed by gh actions-lock.
 #
 # OPTIONAL: BoJ Server Build Trigger
 # This workflow notifies a BoJ Server instance when code is pushed.
@@ -19,7 +20,7 @@ jobs:
     timeout-minutes: 15
     steps:
       - name: Checkout
-        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+        uses: actions/checkout@v6.0.2
       - name: Trigger BoJ Server (Casket/ssg-mcp)
         env:
           BOJ_URL: ${{ secrets.BOJ_SERVER_URL || vars.BOJ_SERVER_URL }}

.github/workflows/codeql.yml

@@ -1,4 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
+# This workflow is managed by gh actions-lock.
 name: CodeQL Security Analysis
 on:
   push:
@@ -36,13 +37,13 @@ jobs:
             build-mode: none
     steps:
       - name: Checkout
-        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+        uses: actions/checkout@v6.0.2
       - name: Initialize CodeQL
-        uses: github/codeql-action/init@c6f931105cb2c34c8f901cc885ba1e2e259cf745 # v3
+        uses: github/codeql-action/init@v4.34.0
         with:
           languages: ${{ matrix.language }}
           build-mode: ${{ matrix.build-mode }}
       - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@c6f931105cb2c34c8f901cc885ba1e2e259cf745 # v3
+        uses: github/codeql-action/analyze@v4.34.0
         with:
           category: "/language:${{ matrix.language }}"

.github/workflows/dependabot-automerge.yml

@@ -1,4 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
+# This workflow is managed by gh actions-lock.
 #
 # dependabot-automerge.yml — enable GitHub's native auto-merge on
 # Dependabot pull requests that match a declared severity / ecosystem
@@ -52,7 +53,7 @@ jobs:
     steps:
       - name: Fetch Dependabot metadata
         id: meta
-        uses: dependabot/fetch-metadata@dbb049abf0d677abbd7f7eee0375145b417fdd34 # v2.2.0
+        uses: dependabot/fetch-metadata@v2.2.0
         with:
           github-token: ${{ secrets.GITHUB_TOKEN }}
       # --- Policy gate -------------------------------------------------------

.github/workflows/dogfood-gate.yml

@@ -1,4 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
+# This workflow is managed by gh actions-lock.
 # Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk>
 #
 # dogfood-gate.yml — Hyperpolymath Dogfooding Quality Gate
@@ -27,7 +28,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4
+        uses: actions/checkout@v4.3.1
 
       - name: Check for A2ML files
         id: detect
@@ -40,7 +41,7 @@ jobs:
 
       - name: Validate A2ML manifests
         if: steps.detect.outputs.count > 0
-        uses: hyperpolymath/a2ml-ecosystem/validate-action@aa4b836bd969df2bc58128cb8e3d20bbc88d5e79 # main
+        uses: hyperpolymath/a2ml-ecosystem/validate-action@main
         with:
           path: '.'
           strict: 'false'
@@ -72,7 +73,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4
+        uses: actions/checkout@v4.3.1
 
       - name: Check for K9 files
         id: detect
@@ -89,7 +90,7 @@ jobs:
 
       - name: Validate K9 contracts
         if: steps.detect.outputs.k9_count > 0
-        uses: hyperpolymath/k9-ecosystem/validate-action@89f3c2702f4f650a92aa7411502f38da06abd562 # main
+        uses: hyperpolymath/k9-ecosystem/validate-action@main
         with:
           path: '.'
           strict: 'false'
@@ -122,7 +123,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4
+        uses: actions/checkout@v4.3.1
 
       - name: Scan for invisible characters
         id: lint
@@ -187,7 +188,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4
+        uses: actions/checkout@v4.3.1
 
       - name: Check for Groove manifest
         id: groove
@@ -246,7 +247,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4
+        uses: actions/checkout@v4.3.1
 
       - name: Check and validate eclexiaiser manifest
         id: eclex
@@ -312,7 +313,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4
+        uses: actions/checkout@v4.3.1
 
       - name: Generate dogfooding scorecard
         run: |

.github/workflows/governance.yml

@@ -1,4 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
+# This workflow is managed by gh actions-lock.
 name: Governance
 
 on:
@@ -14,4 +15,4 @@ permissions:
 
 jobs:
   governance:
-    uses: hyperpolymath/standards/.github/workflows/governance-reusable.yml@81dbf2dd854b1444fd6236fa2352474383b2c2b9
+    uses: hyperpolymath/standards/.github/workflows/governance-reusable.yml@571cc734cd69fb846032ec77a662aa8ee4fc32cd

.github/workflows/guix-nix-policy.yml

@@ -1,4 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
+# This workflow is managed by gh actions-lock.
 name: Guix/Nix Package Policy
 on:
   push:
@@ -20,7 +21,7 @@ jobs:
     permissions:
       contents: read
     steps:
-      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+      - uses: actions/checkout@v6.0.2
       - name: Enforce Guix primary / Nix fallback
         run: |
           # Check for package manager files

.github/workflows/hypatia-scan.yml

@@ -1,4 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
+# This workflow is managed by gh actions-lock.
 name: Hypatia Security Scan
 
 on:

.github/workflows/instant-sync.yml

@@ -1,4 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
+# This workflow is managed by gh actions-lock.
 # Instant Forge Sync - Triggers propagation to all forges on push/release
 name: Instant Sync
 on:
@@ -15,7 +16,7 @@ jobs:
     timeout-minutes: 15
     steps:
       - name: Trigger Propagation
-        uses: peter-evans/repository-dispatch@28959ce8df70de7be546dd1250a005dd32156697 # v3
+        uses: peter-evans/repository-dispatch@v4.0.1
         with:
           token: ${{ secrets.FARM_DISPATCH_TOKEN }}
           repository: hyperpolymath/.git-private-farm

.github/workflows/label-triage.yml

@@ -1,4 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
+# This workflow is managed by gh actions-lock.
 name: Label Triage
 
 # Classify newly-filed issues against the estate label taxonomy.

.github/workflows/labels.yml

@@ -1,4 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
+# This workflow is managed by gh actions-lock.
 name: Labels
 
 # Applies the canonical estate label set from .github/labels.json.