Remediate prototype tooling, setup, and publication

.claude/CLAUDE.md

@@ -1,88 +1,13 @@
-<!--
-SPDX-License-Identifier: CC-BY-SA-4.0
-Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
--->
-## Machine-Readable Artefacts
-
-The following files in `.machine_readable/` contain structured project metadata:
-
-- `STATE.scm` - Current project state and progress
-- `META.scm` - Architecture decisions and development practices
-- `ECOSYSTEM.scm` - Position in the ecosystem and related projects
-- `AGENTIC.scm` - AI agent interaction patterns
-- `NEUROSYM.scm` - Neurosymbolic integration config
-- `PLAYBOOK.scm` - Operational runbook
-
----
-
-# CLAUDE.md - AI Assistant Instructions
-
-## Language Policy (Hyperpolymath Standard)
-
-### ALLOWED Languages & Tools
-
-| Language/Tool | Use Case | Notes |
-|---------------|----------|-------|
-| **AffineScript** | Primary application code | Compiles to JS, type-safe |
-| **Bun** | JS runtime & package management (tier 1) | Default for all new work. Runs compiled ESM/JS directly — no bundler step. Uses an npm-compatible `package.json` plus `bun.lock` — both are expected, not anti-patterns. |
-| **Rust** | Performance-critical, systems, WASM | Preferred for CLI tools |
-| **Tauri 2.0+** | Mobile apps (iOS/Android) | Rust backend + web UI |
-| **Dioxus** | Mobile apps (native UI) | Pure Rust, React-like |
-| **Gleam** | Backend services | Runs on BEAM or compiles to JS |
-| **Bash/POSIX Shell** | Scripts, automation | Keep minimal |
-| **JavaScript** | Only where AffineScript cannot | MCP protocol glue, Bun APIs |
-| **Nickel** | Configuration language | For complex configs |
-| **Guile Scheme** | State/meta files | STATE.scm, META.scm, ECOSYSTEM.scm |
-| **Julia** | Batch scripts, data processing | Per RSR |
-| **OCaml** | AffineScript compiler | Language-specific |
-| **Ada** | Safety-critical systems | Where required |
-
-### BANNED - Do Not Use
-
-| Banned | Replacement |
-|--------|-------------|
-| TypeScript | AffineScript |
-| ReScript | AffineScript |
-| Deno | Bun |
-| Node.js | Bun |
-| npm | Bun |
-| pnpm/yarn | Bun |
-| Go | Rust |
-| Python | Julia/Rust/AffineScript |
-| Java/Kotlin | Rust/Tauri/Dioxus |
-| Swift | Tauri/Dioxus |
-| React Native | Tauri/Dioxus |
-| Flutter/Dart | Tauri/Dioxus |
-
-### Mobile Development
-
-**No exceptions for Kotlin/Swift** - use Rust-first approach:
-
-1. **Tauri 2.0+** - Web UI (AffineScript) + Rust backend, MIT/Apache-2.0
-2. **Dioxus** - Pure Rust native UI, MIT/Apache-2.0
-
-Both are FOSS with independent governance (no Big Tech).
-
-### Enforcement Rules
-
-1. **No new TypeScript files** - Convert existing TS to AffineScript
-2. **Use `package.json` + `bun.lock` for JS runtime deps** - Bun is npm-compatible; a manifest is REQUIRED
-3. **`bun install --production` for production deps** - resolved from `package.json`, pinned via `bun.lock`
-4. **No Go code** - Use Rust instead
-5. **No Python anywhere** - Use Julia for data/batch, Rust for systems, AffineScript for apps
-6. **No Kotlin/Swift for mobile** - Use Tauri 2.0+ or Dioxus
-
-### Package Management
-
-- **Primary**: Guix (guix.scm)
-- **Fallback**: Nix (flake.nix)
-- **JS deps**: Bun (`package.json` + `bun.lock`). Declare tooling as a devDependency and run `bunx --no-install --bun <tool>` — a bare `bunx <tool>` can fetch an unpinned package and may start Node via its shebang.
-
-### Security Requirements
-
-- No MD5/SHA1 for security (use SHA256+)
-- HTTPS only (no HTTP URLs)
-- No hardcoded secrets
-- SHA-pinned dependencies
-- SPDX license headers on all files
-
+<!-- SPDX-License-Identifier: CC-BY-SA-4.0 -->
+<!-- SPDX-FileCopyrightText: 2026 Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk> -->
+# Claude Code project notes
+
+Use the repository-wide agent instructions in [`../CLAUDE.md`](../CLAUDE.md).
+Repository-wide descriptive facts live in [`../phantom-metal-taste_chora.deed`](../phantom-metal-taste_chora.deed)
+in the current DEED format. Do not recreate retired `.a2ml` files or the
+former root-level `.scm` state layout.
+
+Project-specific facts: Rust and Julia libraries plus a Bun site builder are
+implemented to experimental depth; the AffineScript orchestrator is unfinished;
+there is no HTTP API or database integration. All changes and claims must match
+what the source and tests actually demonstrate.

.editorconfig

@@ -1,5 +1,5 @@
-# phantom-metal-taste - Editor Configuration
-# https://editorconfig.org
+# SPDX-License-Identifier: MPL-2.0
+# Editor configuration for the current Rust / Julia / Bun / Guix toolchain.
 
 root = true
 
@@ -20,49 +20,15 @@ trim_trailing_whitespace = false
 [*.rs]
 indent_size = 4
 
-[*.ex]
-indent_size = 2
-
-[*.exs]
-indent_size = 2
-
-[*.zig]
+[*.jl]
 indent_size = 4
 
-[*.ada]
-indent_size = 3
-
-[*.adb]
-indent_size = 3
-
-[*.ads]
-indent_size = 3
-
-[*.hs]
-indent_size = 2
-
-[*.res]
-indent_size = 2
-
-[*.resi]
-indent_size = 2
-
-[*.ncl]
-indent_size = 2
-
-[*.rkt]
+[*.affine]
 indent_size = 2
 
-[*.scm]
-indent_size = 2
-
-[*.nix]
+[*.{js,mjs,json,yml,yaml,toml,scm,sh}]
 indent_size = 2
 
 [Justfile]
 indent_style = space
 indent_size = 4
-
-[justfile]
-indent_style = space
-indent_size = 4

.gitattributes

@@ -1,54 +1,43 @@
 # SPDX-License-Identifier: MPL-2.0
-# RSR-compliant .gitattributes
+# RSR-compliant text and diff attributes for the current repository languages.
 
 * text=auto eol=lf
 
-# Source
-*.rs    text eol=lf diff=rust
-*.ex    text eol=lf diff=elixir
-*.exs   text eol=lf diff=elixir
-*.jl    text eol=lf
-*.res   text eol=lf
-*.resi  text eol=lf
-*.ada   text eol=lf diff=ada
-*.adb   text eol=lf diff=ada
-*.ads   text eol=lf diff=ada
-*.hs    text eol=lf
-*.chpl  text eol=lf
-*.scm   text eol=lf
-*.ncl   text eol=lf
-*.nix   text eol=lf
-
-# Docs
-*.md    text eol=lf diff=markdown
-*.adoc  text eol=lf
-*.txt   text eol=lf
-
-# Data
-*.json  text eol=lf
-*.yaml  text eol=lf
-*.yml   text eol=lf
-*.toml  text eol=lf
-
-# Config
-.gitignore     text eol=lf
-.gitattributes text eol=lf
-justfile       text eol=lf
-Makefile       text eol=lf
-Containerfile  text eol=lf
-
-# Scripts
-*.sh   text eol=lf
-
-# Binary
-*.png   binary
-*.jpg   binary
-*.gif   binary
-*.pdf   binary
+# Rust and Julia source
+*.rs text eol=lf diff=rust
+*.jl text eol=lf
+
+# Bun site tooling
+*.js text eol=lf
+*.mjs text eol=lf
+
+# AffineScript source/scaffolds
+*.affine text eol=lf
+
+# Guix Scheme and configuration
+*.scm text eol=lf
+*.toml text eol=lf
+*.json text eol=lf
+*.yaml text eol=lf
+*.yml text eol=lf
+*.sh text eol=lf
+
+# Documentation
+*.md text eol=lf diff=markdown
+*.adoc text eol=lf
+*.txt text eol=lf
+
+# Build/task files
+Justfile text eol=lf
+justfile text eol=lf
+Cargo.lock text eol=lf -diff
+
+# Binary assets
+*.png binary
+*.jpg binary
+*.jpeg binary
+*.gif binary
+*.pdf binary
 *.woff2 binary
-*.zip   binary
-*.gz    binary
-
-# Lock files
-Cargo.lock  text eol=lf -diff
-flake.lock  text eol=lf -diff
+*.zip binary
+*.gz binary

.github/CODEOWNERS

@@ -1,34 +1,24 @@
 # SPDX-License-Identifier: MPL-2.0
-# CODEOWNERS - Define code review assignments for GitHub
-# See: https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-code-owners
-
-# Default: sole maintainer for all files
+# Repository owner is the default reviewer; repository permissions govern merge authority.
 * @hyperpolymath
 
-# Security-sensitive files require explicit ownership
-SECURITY.md @hyperpolymath
+# Security-sensitive and governance files.
+SECURITY.adoc @hyperpolymath
 .github/workflows/ @hyperpolymath
 .machine_readable/ @hyperpolymath
-contractiles/ @hyperpolymath
 
-# License files
+# Licences and project policy.
 LICENSE @hyperpolymath
 LICENSES/ @hyperpolymath
-
-# Configuration
-.gitignore @hyperpolymath
-.github/ @hyperpolymath
-
-# Documentation
-README* @hyperpolymath
-CONTRIBUTING* @hyperpolymath
-CODE_OF_CONDUCT* @hyperpolymath
-GOVERNANCE* @hyperpolymath
+GOVERNANCE.adoc @hyperpolymath
 MAINTAINERS* @hyperpolymath
-CHANGELOG* @hyperpolymath
-ROADMAP* @hyperpolymath
+CHANGELOG.adoc @hyperpolymath
 
-# Build and CI
+# Source, build, and provisioning.
+Cargo.toml @hyperpolymath
+Cargo.lock @hyperpolymath
+Project.toml @hyperpolymath
+mise.toml @hyperpolymath
 Justfile @hyperpolymath
-Makefile @hyperpolymath
-*.sh @hyperpolymath
+build/just/ @hyperpolymath
+launcher.sh @hyperpolymath