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harvardinformatics
scRNAseq-preprocessing
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#12
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adamfreedman
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Aug 17, 2026
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#12
adamfreedman
merged 7 commits into
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harvardinformatics/scRNAseq-preprocessing:main
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Commits on Aug 4, 2026
Fix OOM failures and data-driven errors in multi-dataset runs
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Commits on Aug 7, 2026
Harden downsample_clusters, right-size memory, and improve scalability
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Commits on Aug 10, 2026
Add low-quality-sample quarantine and config-driven excluded_samples
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Commits on Aug 12, 2026
Move execution policy to profile and quarantine to Snakefile handlers
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Commits on Aug 13, 2026
Give the runner job a correct pass/fail state via a post-run verification
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Commits on Aug 14, 2026
Fix CI: move finalize function to common.smk and gate it to SLURM runs
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Commits on Aug 16, 2026
Preserve cell metadata in posthocfilter memory strip (fix full-workflow CI)
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