Issues

• Issues With Toil Workers

  glennhickey/progressiveCactus#138 · Filter by author saoirseguita opened on Jul 17, 2025

• Cannot install over git

  glennhickey/progressiveCactus#137 · Filter by author IOB-Muenster opened on May 22, 2024

• cactus-hal2maf: command not found

  glennhickey/progressiveCactus#136 · Filter by author hopehealey opened on Apr 17, 2024

• Support question: End-to-end chromosome alignments with progressive cactus

  glennhickey/progressiveCactus#135 · Filter by author JohnLloyd-Bayer opened on May 26, 2023

• Detecting synteny blocks among multiple genomes?

  glennhickey/progressiveCactus#134 · Filter by author aminakur opened on May 18, 2023

• cat: write error: No space left on device

  glennhickey/progressiveCactus#133 · Filter by author Andrinajoro opened on Mar 22, 2023

• progressive_schedule fails

  glennhickey/progressiveCactus#132 · Filter by author vpymerel opened on Oct 30, 2022
  2

• Recomend ways to filter cactus result

  glennhickey/progressiveCactus#131 · Filter by author zhangzhiyangcs opened on May 27, 2022

• The unauthenticated git protocol on port 9418 is no longer supported.

  glennhickey/progressiveCactus#130 · Filter by author ghost opened on May 3, 2022

• cactus_consolidated error

  glennhickey/progressiveCactus#129 · Filter by author lpescitelli opened on Dec 16, 2021
  2

• New Version on Cactus "RunCactusPreprocessorThenProgressiveDown' i/O/jobsxUaNh with ID i/O/jobsxUaNh is completely failed"

  glennhickey/progressiveCactus#128 · Filter by author drabe004 opened on Oct 29, 2021

• how many CPU hours it cost for 100 genomes

  glennhickey/progressiveCactus#127 · Filter by author yywyaoyaowu opened on Oct 28, 2021

• trouble about make

  glennhickey/progressiveCactus#126 · Filter by author CaoShuoa opened on Apr 25, 2021
  1

• AssertionError: assert len(genomeNodes) == 1

  glennhickey/progressiveCactus#125 · Filter by author Jome0169 opened on Mar 19, 2021

• Fatal Python error: initfsencoding: Unable to get the locale encoding

  glennhickey/progressiveCactus#124 · Filter by author DieTANG opened on Feb 8, 2021

• Assertion error during experimentWrapper.py

  glennhickey/progressiveCactus#122 · Filter by author stlomo opened on Dec 10, 2020
  1

• error: cannot convert ‘bool’ to ‘char*’ in return

  glennhickey/progressiveCactus#121 · Filter by author annabananakobana opened on Oct 15, 2019
  1

• RuntimeError: Failed to parse newick tree

  glennhickey/progressiveCactus#120 · Filter by author nt365 opened on Sep 30, 2019
  5

• Installation problem

  glennhickey/progressiveCactus#119 · Filter by author francicco opened on Sep 14, 2019
  1

• Unable to make. Fails with "Symbol not found: __PyCodecInfo_GetIncrementalDecoder"

  glennhickey/progressiveCactus#118 · Filter by author iljungr opened on Jun 6, 2019

• job is completely failed

  glennhickey/progressiveCactus#117 · Filter by author amizeranschi opened on Feb 28, 2019

• [../lib//halLib.a] Error

  glennhickey/progressiveCactus#116 · Filter by author francicco opened on Sep 6, 2018

• Problem with tycoon database??

  glennhickey/progressiveCactus#108 · Filter by author tdlong opened on May 9, 2018
  12

• problems encountered when running examples provided

  glennhickey/progressiveCactus#107 · Filter by author ErinZhang1998 opened on Apr 7, 2018

• Monitor progressiveCactus progress

  glennhickey/progressiveCactus#106 · Filter by author VidJa opened on Mar 29, 2018