Release/v2.0.7 -> main - #108
Merged
Merged
Conversation
Release/v2.0.0
- Removal of "multiple" rarefaction concept. Replace by "multiple iterations"
… fix OTU table formatting
…s to use it. Updated citation style to APA 7th edition.
Release/v2.0.4 to `develop`
…encies with "install.packages()" and reorder DESCRIPTION. See https://bioinformatics.stackexchange.com/questions/3365/r-package-development-how-does-one-automatically-install-bioconductor-packages/3375#3375
…uild vignette. Resize box annotation for plot_neutral_model()
… `sncm.fit`. Gains `.internal_warn_sncm_fit()`
Second round of revisions from MRA
- Relaxed version requirements for `phyloseq` and `stats4`.
- Relaxed version requirements for `phyloseq` and `stats4`.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This brings the changes from
release/v2.0.5, which address MRA reviewers' suggestions and fixes to documentation and CI fromrelease/v2.0.7. Both releases made it to CRAN. The v2.0.6 failed to make it to CRAN due to invalid URLs in NEWS.md. I upgraded to the development version, but aside from that, it's the same as the CRAN version.BRCore 2.0.7
2026-05-19
BRCore 2.0.5
2026-05-18
Bug Fixes
Relaxed version requirements for
phyloseqandstats4to improve compatibility.5ba7a7c Added
biocViewsfield to DESCRIPTION to allow installation of Bioconductor dependencies viainstall.packages().40d79e4 Fixes to quote 'BRCore' in DESCRIPTION and typo fix of
sncm.fitin _pkgdown.yamlRefactoring
sncm.fit(): replacedsuppressWarnings()with targeted warning capture via new internal helper.internal_warn_sncm().plot_neutral_model(): refined plot axis styling and formatted y-axis as percent. Resized box annotation.data("bcse")calls from examples and README vignette.Documentation
num_iterparameter from README examples.