Annovar v0.2 is problematic and needs a correction.

[jennaj]

Details here: https://github.com/galaxyproject/galaxy/issues/4001

The problem is not new and has been reported since the tool was updated (~18 months ago). Not only is VCF input a problem for some, but possibly also Tabular (note: usage-problems Tab input have not been specifically reviewed).

Biostars posts about how this is impacting users at Galaxy main:

• https://biostar.usegalaxy.org/p/22830/
• https://biostar.usegalaxy.org/p/15686/
• https://biostar.usegalaxy.org/p/24169/