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HISP rework for PFC-TT - #86

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HISP rework for PFC-TT#86
AdriaLlealS wants to merge 493 commits into
festim-dev:mainfrom
AdriaLlealS:main

This pull request is big! We're only showing the most recent 250 commits

Commits on Nov 25, 2025
- errors
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- errors
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- errors
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- errors
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- errors
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- errors
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- trying
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- trying
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- kinda solved
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- trying again
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- trying
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- testing newbc
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- baking test
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- dfw_bins
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- custom tols SS
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- mistake
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Commits on Nov 26, 2025
- div bins
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- tolerances
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- tols
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- tols
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- tols and cap stepsize
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- model
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- xdmfexport
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- xdmfexport back
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- tols
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- tryig to make hisp able to run in old and new BCs
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- init
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Commits on Nov 27, 2025
- Updated model to handle new and old bc
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- error calling gaussian_ufl
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- modified model to currently parse pulses data
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- smaller initial timesteps
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- Fixing initial timestep
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- tolerances and initial timesteps
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- finer mesh for W bins
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- trying to make solver converge for W
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- W not converging
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- even finer mesh for W
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- initial timestep
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- ridiculuously small stepsize to avoid solver issue
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- solver not converging for W bins
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  9554a0b
- trying to make the solver converge for W bins
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- Finding tols for the NewBC
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- modified tols and initial stepsize for NewBC
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- Added option to accept copper thickness as None
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- tols timesteps
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- super fine W mesh near the surface
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- trying to make W bins run with old BC
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- ridiculously small initial stepsize
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- W bins not converging with oldBCs
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Commits on Nov 28, 2025
- Debugging W oldBC
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- rtol
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- atol W oldBC
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- tolerances
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- higher timestep cap
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- Tolerances and surface reocmb BC
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- normalizing gaussian function from 0 to L
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- tolerances
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- initial timestep
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- tols
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- rtol in model.py
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Commits on Dec 1, 2025
- rtol div bins
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- more aggressive cutback factor
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- 0 conc. BC
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Commits on Dec 2, 2025
- trying to solve div bins
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- trying to run div bins
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- div bins
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- div W bins
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- W div bins
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- rtol W bins
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- 5s max stepsize FP
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- W div bins
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Commits on Dec 3, 2025
- last W div bin
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- capping stepsize
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- exports
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- print festim version
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- festim version
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- trap element check
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- checking
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- trap elements type
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- my_model inspection
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- elemnts for traps checking
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- checking trap elements
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- going back to dg traps to check
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- xdmf export not working for dg traps
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- testing
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- testing
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- testing
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- testing
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- testing
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- test
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- back to normal
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- almost working for all
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- adding vertices function
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Commits on Dec 4, 2025
- tolerances and mesh
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- mesh
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- Previous setup ran all wall bins and 50% div bins
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- finer mesh
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- slower timestep coarser meshes NewBC
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- stepsize
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- new meshing
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- running all bins
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- run all bins
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Commits on Dec 5, 2025
- trying to run all div bins
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Commits on Dec 10, 2025
- New hisp model and simulations input from a csv table
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- bin class defined in hisp
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- fixing bug in bin indexing
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- coarser meshes for implantation flux
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Commits on Dec 15, 2025
- Moving bin, reactor classes to PFC-Tritium-Transport.
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- moving scenario and pulses definition to PFC-Tritium-Transport
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Commits on Dec 18, 2025
- testing material file implementation
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Commits on Dec 19, 2025
- testing new meshing function
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- indexing error in get_heat
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- new festim models
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  014cb3b
- fixing hisp bin
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  cb9173c
- fixing hisp.bin
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  eba38b0
- fixing hisp new_model
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  535bcec
- fixing new models to hanlde materials table
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- dolfinx time issues
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Commits on Jan 8, 2026
- updating models to handle new material objetcs
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- temperature function errors
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  8112ff8
- fixing exports
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  d6bfb11
- target number of iterations
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  425d7fe
- fixing trap parameters
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  e6116a1
- debugging trap parameters
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  05eec43
- fixing trap density
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- support all BCs types
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- printing BCs summary
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  4e03e65
- fixing sources implementation
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- fixing source definitions
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- cleaning the repo
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- imports in helpers
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- returning to previous imports
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Commits on Jan 9, 2026
- migrating functions to new_mb_model
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- changing import locations
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- deleting old imports
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- deleting old functions still imported
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- deleting old model files
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- getting the repo ready
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Commits on Jan 12, 2026
- deleting unused files
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- Merge pull request #3 from AdriaLlealS/testing2
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- readme
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- Update README.md
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- modifying imports directory
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- adding surface recombination to the analytical BC
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Commits on Jan 13, 2026
- updating cross recombination term
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- going back to previous mb_model
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- Merge branch 'main' into testing2
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- Merge pull request #4 from AdriaLlealS/testing2
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Commits on Jan 19, 2026
- Set model element for traps to 'CG'
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Commits on Jan 20, 2026
Commits on Jan 23, 2026
- Finer mesh
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Commits on Jan 28, 2026
- Implantation ranges and reflection coefficients
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- Adding dynamic calculations for implantation
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- Merge branch 'testing2' of https://github.com/AdriaLlealS/hisp into testing2
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- Implantation parameters debugging
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Commits on Jan 29, 2026
- Migrating PlasmaDataHandling to PFC-TT and adding scaling factors to the Pulse class
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Commits on Feb 2, 2026
- adding profiles export for sanity check and analysis
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- Profile1DExport
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- Setting profile exports to false for the moment
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- Merge pull request #5 from AdriaLlealS/testing2
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Commits on Feb 4, 2026
- added temperature model for SS
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- Merge pull request #6 from AdriaLlealS/testing2
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Commits on Feb 5, 2026
- Added meshing capabilities to PFC-TT
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- improving meshing from PFC
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- solving import error
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- Merge pull request #7 from AdriaLlealS/testing2
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Commits on Feb 10, 2026
- Updating initial stepsize to 0.01s
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Commits on Feb 18, 2026
- Solving profiles exporting bug
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- fixing profile export times
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- fixing profile export times
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Commits on Feb 19, 2026
- Merge pull request #8 from AdriaLlealS/testing2
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- Fixing buf in profile export times
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- Merge pull request #9 from AdriaLlealS/testing2
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- Changing minimum spacing between exported profiles to 10s
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- Merge pull request #10 from AdriaLlealS/testing2
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Commits on Mar 4, 2026
- Small bug choosing temperature model for W bins with cu_thickness=0
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- Small bug choosing temperature model for W bins with cu_thickness=0
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Commits on Mar 10, 2026
- switching back to CG elements for traps
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Commits on Mar 13, 2026
- showing trap elemnt type
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- going back to DG elements for traps
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- taking smaller stepsizes for boron
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Commits on Mar 16, 2026
- trying CG for W
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- back to DG trap elements
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Commits on Mar 17, 2026
- testing with CG elements
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- switching yet again to DG
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- fixing max_stepsize bug
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  4ecd7b8
- fixing max stepsize during baking
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Commits on Mar 18, 2026
- implementing locally time to export to run previous version of fesitm
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- commenting out profile exports for festim20a
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- festim20a
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- postpro
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Commits on Mar 24, 2026
- Activating profile exports and letting FESTIM handle it natively
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- checkpointing for future restarts
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- exports to input_folder/results
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- naming of checkpoint files
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Commits on Mar 26, 2026
- Merge branch 'main' into testing2
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- Merge pull request #12 from AdriaLlealS/testing2
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  955f389
- allowing user to provide custom temperature models from PFC-T-T
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- removing references to old export
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Commits on Mar 27, 2026
- Merge pull request #13 from AdriaLlealS/testing2
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Commits on Apr 1, 2026
- Improved input_table / bin syntax
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- Merge pull request #14 from AdriaLlealS/testing2
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Commits on Apr 7, 2026
- 0 flux BC test
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- removing the old_backup from the main
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- removing old files from the main branch
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- Merge pull request #15 from AdriaLlealS/main
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Commits on Apr 9, 2026
- baking temperature from scenario
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- baking temp from PFC-TT
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- Surface recombination at rearside
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- Material parameters debug
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Commits on Apr 28, 2026
- Merge pull request #16 from AdriaLlealS/main
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- saturating traps with D
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- sync
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- Saturating traps with D
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- initial concentration
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- gdc+bake pulse created
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- commenting out the D pre-loading
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Commits on Apr 29, 2026
- testing damaged tungsten
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Commits on May 7, 2026
- add surface term to analytical BC
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- removing damage in the surface
  
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- correcting the formula
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- back to previous formula
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- kr0
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- kr0
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- silly mistake
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- mistake
  
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Commits on May 12, 2026
- clean
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  7869b21
- Surface concentration update and GDC+bake handling
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- cleaning new_mb_model
  
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  committed
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- Merge pull request #18 from AdriaLlealS/testing2
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- fixing bug when implantation_params are none
  
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- tests and updating classes import from PFC-TT
  
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- readme
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- readme
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- readme
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Commits on May 13, 2026
- examples
  
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- updated readme
  
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- updated plot
  
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- updated figure
  
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- updated readme files
  
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- readme
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- readme
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- updated readme
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- yet another readme update
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- examples readme
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Commits on Jul 30, 2026
- new_model.py: Modified waiting period milestones
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Commits on Aug 31, 2026
- Pass absolute times and peak heat flux to custom
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Commits on Oct 14, 2026
- Merge pull request #19 from NatashaAaskoven/main
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Commits

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