Example Configuration File

A.pdb # pdb filename of protein with linker attached to CTER
B.pdb # pdb filename of protein with linker attached to NTER
20.0 # Maximum linker length (A)
2.0 # Grid spacing (A)
60 # Rotation angle 1 spacing (deg)
60 # Rotation angle 2 spacing (deg)
60 # Rotation angle 3 spacing (deg)
2.0 # Overlap cutoff parameter (A)
1000 # Number of unique coords kept in memory
2 # Number of experimental constraints
50 200 20 1 # atom_index1, atom_index2, distance, tolerance
421 135 12 4 # atom_index1, atom_index2, distance, tolerance