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docs: 馃摑 add protocol that was mostly moved from other repo - #87

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Description

Moved and edited the protocol from the WP3 private repo.

Closes #73

Needs a thorough review.

Checklist

  • Ran just run-all
  • (When relevant) Ran just build-package

@lwjohnst86

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@guntof @KRMAHA @Davads123 @MikkelKolind @K-Beicher I'll need your help in reviewing this and confirming the information there. I took what I could find from the WP3 repo, but didn't know where else more details were kept.

@lwjohnst86 lwjohnst86 moved this from To do to In review in Platform development Sep 17, 2026
Comment thread docs/protocol.qmd

## Aims

<!-- TODO: Add aims -->

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I couldn't find info on what the aims were. Please fill in what they should be 鈽猴笍

Comment thread docs/protocol.qmd

<!-- TODO: What does `test-specific` mean? -->

<!-- - test-specific contraindications. -->

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This was something I found but I couldn't figure out what that meant. Help?

Comment thread docs/protocol.qmd
title: "Protocol"
---

<!-- TODO: Add appropriate citations and bib file -->

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I couldn't find the reference bib file anywhere. So I removed the citations from the text until the bib file can be added.

Comment thread docs/protocol.qmd

<!-- TODO: confirm these numbers -->

We estimated a response rate of between 30-50% for both the normal glycemia and

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I know the estimated response rate changed since you sent out more questionnaire requests. Please add comments here to clarify this 鈽猴笍

Comment thread docs/protocol.qmd
Comment on lines +49 to +52
anticipate at least a response rate of 40% for the participants with normal
glycemia. We estimate that people with prediabetes will have a lower response
rate of about 30%, as those with prediabetes tend to have lower socioeconomic
status, who are also less likely to respond to surveys.

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I changed this part based on more questionnaires being sent out.

Comment thread docs/protocol.qmd
Comment on lines +54 to +58
Based on this estimated response rate, we will randomly sample 80,000
individuals from the normal glycemia group in order to obtain at least 30,000
participants who completed the survey. We will invite all approximately 12,000
people with prediabetes to reach approximately 3,000 participants. All together,
we estimate a total of 33,000 people who completed the survey.

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Are these the new numbers?

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This file can be ignored, I got it from Kris.

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Move "protocol" from private repo to docs/

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