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SEAB-7667: Document categories - #326

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svonworl merged 6 commits into
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feature/seab-7667/document-ai-categories
Aug 26, 2026
Merged

svonworl merged 6 commits into
developfrom
feature/seab-7667/document-ai-categories

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@svonworl

@svonworl svonworl commented Aug 24, 2026 •

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Description
This PR changes the documentation to better explain Dockstore's "category" feature. Specifically, it:

  • Adds a new "Categories" subsection to "END USER TOPICS".
  • Renames the "categories" glossary entry to "category" and improves definition.
  • Adds an "EDAM" glossary entry.

We need to create a new Discourse topic for the new "Categories" page. Per the instructions at bottom, will run the action to generate it after the PR is approved.

Issue
https://ucsc-cgl.atlassian.net/browse/SEAB-7667

Please make sure that you've checked the following before submitting your pull request. Thanks!

@svonworl svonworl self-assigned this Aug 24, 2026
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svonworl requested a review from denis-yuen August 24, 2026 19:26
@denis-yuen

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Oh, may be old news
The build status provides a link to the built document automatically, that's convenient

Comment thread docs/_attic/glossary_entries.py Outdated
pronunciation='')
Catagories = GlossEntry("category",
acronym_full="",
definition="A grouping of Dockstore entries that share the same trait. They might relate to the same scientific topic, perform the same operation, read/write the same data type or format, etc.",

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Probably prefer input/output over read/write, this is the terminology we use in search.
Also, workflow languages (generally?) output data rather than overwriting data.

@denis-yuen

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Oh, topic build failure is legitimate for once

@svonworl
svonworl merged commit 809650c into develop Aug 26, 2026
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@svonworl
svonworl deleted the feature/seab-7667/document-ai-categories branch August 26, 2026 17:32
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2 participants