Issues

• Pick up regtools strandness fix

  diekhans/intron-prospector#29 · Filter by author diekhans opened on May 29, 2026
  

• what determines strand if --strandness is specified and a genome is supplied

  diekhans/intron-prospector#28 · Filter by author diekhans opened on May 29, 2026
  

• Add instructrions for build with conda pkg_config

  diekhans/intron-prospector#24 · Filter by author diekhans opened on Mar 9, 2026
  

• add more canonical splice sites

  diekhans/intron-prospector#22 · Filter by author diekhans opened on Sep 28, 2025
  

• create presets for Illumina, PB, and ONT

  diekhans/intron-prospector#21 · Filter by author diekhans opened on Sep 12, 2025
  1

  

• internal splice junction motif filter option

  diekhans/intron-prospector#18 · Filter by author cafelton opened on Jul 17, 2025

• Strandedness not behaving as expected

  diekhans/intron-prospector#17 · Filter by author cafelton opened on Jul 16, 2025

• match more U12 intron motifs

  diekhans/intron-prospector#16 · Filter by author diekhans opened on Mar 9, 2025

• handling conflicting strands in merge

  diekhans/intron-prospector#15 · Filter by author diekhans opened on Jun 20, 2024

• generate an error is not stranded junctions are found

  diekhans/intron-prospector#14 · Filter by author diekhans opened on Aug 29, 2023
  1

• Clearly document what is required to get strand in output

  diekhans/intron-prospector#13 · Filter by author diekhans opened on Aug 24, 2023
  

• provide a troff man page

  diekhans/intron-prospector#11 · Filter by author diekhans opened on Feb 8, 2023
  

• rethink max-anchor-indel-size default

  diekhans/intron-prospector#10 · Filter by author diekhans opened on Feb 8, 2023
  

• have option to generate BEDs with extra info in calls TSV

  enhancement
  diekhans/intron-prospector#8 · Filter by author diekhans opened on Jan 24, 2022
  

• missing target cause missing output even with -S

  bug
  diekhans/intron-prospector#7 · Filter by author diekhans opened on Jan 24, 2022