____/\/\/\/\/\______/\/\/\/\/\/\______/\/\/\/\/\________/\/\/\/\/\____ __/\/\______________/\/\______________/\/\____/\/\______________/\/\__ __/\/\__/\/\/\______/\/\/\/\/\________/\/\/\/\/\__________/\/\/\/\____ __/\/\____/\/\______/\/\______________/\/\______________/\/\__________ ____/\/\/\/\/\______/\/\/\/\/\/\______/\/\______________/\/\/\/\/\/\__ ______________________________________________________________________
GEP2 is a user-friendly, containerised, and efficient Snakemake pipeline designed to facilitate high-quality genome assembly, quality control and curation. Developed under the ERGA, BGE and BGE+ initiatives, it reflects Earth BioGenome Project standards and recommendations.
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Example of simple QC🚧
Example of end-to-end assembly pipeline facilitated by GEP2
Example QC with EAR generation🚧