cribbslab

These are the workhorse pipelines for the Adam Cribbs' lab

Pair-anchored isoform-switch annotation for single-cell long-read RNA-seq — Nextflow pipeline (Sicelore → IsoQuant → SQANTI3 → functional annotation → SUPPA) plus an R package for structure/consequence attribution.

Single cell pipelines

Repo for working on long-read triple amidite bulk RNA-seq

Containing code for splitting out concatenated fastq files

Simulating reads of varying sequencing technologies

Deseq2 automatic report generation