Issues

• Update/add software

  enhancement
  comorment/containers#325 · Filter by author espenhgn opened on Jul 2, 2026

• Add GH action to automatize releases

  comorment/containers#316 · Filter by author espenhgn opened on Nov 27, 2025

• Add Anchore container scan action

  enhancementno-issue-activity
  comorment/containers#288 · Filter by author espenhgn opened on Nov 21, 2024
  1

• Fix GitHub rate limit exceeded

  bugno-issue-activity
  comorment/containers#283 · Filter by author espenhgn opened on Oct 18, 2024
  2

  

• Update /tests/test_gwas_py.py to support Docker containers

  enhancementno-issue-activity
  comorment/containers#280 · Filter by author espenhgn opened on Oct 11, 2024
  1

• Spawn container instances in the background

  enhancementno-issue-activity
  comorment/containers#269 · Filter by author espenhgn opened on Aug 12, 2024
  1

  

• Subscript out of bound

  no-issue-activity
  comorment/containers#258 · Filter by author KirakiraZLY opened on May 7, 2024
  4

  

• LDpred2: LD estimation with physical position instead of genetic distance

  enhancementno-issue-activity
  comorment/containers#257 · Filter by author deepchocolate opened on Apr 25, 2024
  1

  

• LDpred2: Crash with characters and integers in chromosome column

  bugno-issue-activity
  comorment/containers#255 · Filter by author espenhgn opened on Apr 23, 2024
  1

• misc. improvements

  enhancementno-issue-activity
  comorment/containers#221 · Filter by author espenhgn opened on Feb 2, 2024
  6

  

• Package LDpred2 scripts

  no-issue-activity
  comorment/containers#218 · Filter by author deepchocolate opened on Jan 16, 2024
  3

• Option to get marker, effect allele and beta in the output

  no-issue-activity
  comorment/containers#217 · Filter by author Mahantesh-Biradar opened on Jan 5, 2024
  4

• Add PRS-CS deps

  enhancementno-issue-activity
  comorment/containers#215 · Filter by author espenhgn opened on Dec 13, 2023
  1

  

• LDpred2: strategy for per-chromosome resolved PLINK .bed files?

  enhancementno-issue-activity
  comorment/containers#210 · Filter by author espenhgn opened on Nov 15, 2023
  3

• Fix myst cross-reference warnings. Also fix TOC.

  documentationno-issue-activity
  comorment/containers#206 · Filter by author espenhgn opened on Oct 17, 2023
  1

• gwas.py gwas crashes with a KeyError: 0 trying to rename the IID column

  bugno-issue-activity
  comorment/containers#163 · Filter by author rzetterberg opened on Apr 28, 2023
  5

  

• LDpred2: Test LDSC regression result

  no-issue-activity
  comorment/containers#154 · Filter by author deepchocolate opened on Apr 19, 2023
  1

  

• LDpred2: Add unit test for choice of reference alleles

  no-issue-activity
  comorment/containers#147 · Filter by author espenhgn opened on Mar 6, 2023
  1

• Sumstats: Join up chromosome and position

  no-issue-activity
  comorment/containers#137 · Filter by author deepchocolate opened on Feb 21, 2023
  9

• LDpred2: LD window, imputation,etc

  no-issue-activity
  comorment/containers#130 · Filter by author deepchocolate opened on Feb 10, 2023
  2

  

• Discussion: Apptainer vs. Singularity

  no-issue-activity
  comorment/containers#112 · Filter by author espenhgn opened on Dec 13, 2022
  1

• tests/test_saige.py::test_saige_SAIGE() function is missing files

  bugno-issue-activity
  comorment/containers#110 · Filter by author espenhgn opened on Dec 13, 2022
  1

• gwas.py: Include BOLT-LMM in pipeline

  enhancementno-issue-activity
  comorment/containers#95 · Filter by author espenhgn opened on Nov 22, 2022
  1

  

• set #SBATCH --error/--output flags in gwas.py

  enhancementno-issue-activity
  comorment/containers#80 · Filter by author espenhgn opened on Nov 4, 2022
  1

  

• gwas.sif: Compile GCTB (SBayesR) with MPI bindings.

  enhancementno-issue-activity
  comorment/containers#75 · Filter by author espenhgn opened on Oct 25, 2022
  1