All issues

Search results

Tests workflow failing

Status: Open.

#166 In cgat-developers/cgat-flow;

· IanSudbery opened on Jun 19, 2025

java VM optoins change

Status: Open.

#163 In cgat-developers/cgat-flow;

· IanSudbery opened on Dec 12, 2024

semi colons in preprocess commands

Status: Open.

#162 In cgat-developers/cgat-flow;

· IanSudbery opened on Jul 15, 2024

buildJunctions in mapping pipeline produces invalid file

Status: Open.

#157 In cgat-developers/cgat-flow;

· IanSudbery opened on Mar 23, 2022

Alternate pipeline paths and checksums

Status: Open.

#149 In cgat-developers/cgat-flow;

· IanSudbery opened on Sep 20, 2021

rnaseqqc - Error setting xlim in plotStrandednessSalmon

Status: Open.

#146 In cgat-developers/cgat-flow;

· IanSudbery opened on Sep 2, 2021

cgat-flow-pipelines.yml causes installation of cgat-apps 0.6.0

Status: Open.

#143 In cgat-developers/cgat-flow;

· IanSudbery opened on Aug 26, 2021

pipeline_genesets assumes that a genome has a miRBase entry

Status: Open.

#136 In cgat-developers/cgat-flow;

· IanSudbery opened on Feb 16, 2021

Installation breaks cgat-apps bamtools

Status: Open.

#133 In cgat-developers/cgat-flow;

· IanSudbery opened on Nov 20, 2020

MACS2 is now compatible with python3

Status: Open.

#132 In cgat-developers/cgat-flow;

· IanSudbery opened on Nov 10, 2020

bamstats counts unaligned reads as intergenic.

Status: Open.

#130 In cgat-developers/cgat-flow;

· IanSudbery opened on Sep 15, 2020

install-level script conflicts

Status: Open.

#127 In cgat-developers/cgat-flow;

· Acribbs opened on Jan 20, 2020