✨ feat: add Python deep learning API with PyTorch and Lightning integ… - #86

Merged

cauliyang merged 17 commits into

001-biodata-dl-libfrom

003-python-dl-optimization

Nov 8, 2025

Commits on Nov 8, 2025

✨ feat: add Python deep learning API with PyTorch and Lightning integration
cauliyang
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b82ae33
✅ test: enable all ignored tests and remove placeholder test files
cauliyang
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f61d75d
feat(ci): implement comprehensive Python testing workflow
cauliyang
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32a975a
🔧 chore: improve Python CI workflow and add pytest-cov dependency
cauliyang
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a8af92c
🔧 chore: update pre-commit config and remove Rust hooks
cauliyang
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0cf4e3e
🔧 chore: clean up GitHub Actions workflow triggers
cauliyang
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33f6e9a
dev: fix ci-error cased by cache version
cauliyang
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9b8fd92
dev: fix ci-error by reducing cpu count
cauliyang
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a002b96
🐛 fix(tests): fix Windows CI failure in GIL release test
cauliyang
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b2e5743
📝 docs(stubs): update Python type stubs for complete API coverage
cauliyang
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8e5cc23
🎨 style: apply ruff formatting to type stubs and pre-commit config
cauliyang
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72992c5
dev: reduce coverage limit
cauliyang
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7e7b664
test: increase test.fastq size and fix Windows timer issues
cauliyang
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083f264
fix(tests): update test expectations for larger test.fastq dataset
cauliyang
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a76246d
dev: fix fialing python tests
cauliyang
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921270f
⚡️ perf(tests): increase summary performance test timeout to 120s
cauliyang
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a33f4ca
⚡️ perf(tests): increase summary performance test timeout to 150s
cauliyang
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d2026a3