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biodatageeks

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  1. sequila sequila Public

    SeQuiLa: Distributed analytics for genomics based on Apache Spark!

    HTML 10 7

  2. polars-bio polars-bio Public

    Blazing-Fast Bioinformatic Operations on Python DataFrames

    Python 207 37

  3. datafusion-bio-formats datafusion-bio-formats Public

    Apache DataFusion table providers for bioinformatic file formats

    Rust 9 5

  4. datafusion-bio-functions datafusion-bio-functions Public

    Apache DataFusion functions for bioinformatic operations

    Rust 1 2

  5. vepyr-plugins vepyr-plugins Public

    vepyr plugin manifests for cache builder

    Python 3

Repositories

Showing 10 of 66 repositories
  • polars-bio Public

    Blazing-Fast Bioinformatic Operations on Python DataFrames

    biodatageeks/polars-bio's past year of commit activity
    Python 207 Apache-2.0 37 35 10 Updated Nov 7, 2026
  • vepyr Public

    vepyr (/ˈvaɪpər/) — VEP Yielding Performant Results — a blazing-fast Rust reimplementation of Ensembl's Variant Effect Predictor.

    biodatageeks/vepyr's past year of commit activity
    Python 3 Apache-2.0 0 25 22 Updated Nov 7, 2026
  • datafusion-bio-functions Public

    Apache DataFusion functions for bioinformatic operations

    biodatageeks/datafusion-bio-functions's past year of commit activity
    Rust 1 Apache-2.0 2 33 24 Updated Nov 7, 2026
  • datafusion-bio-formats Public

    Apache DataFusion table providers for bioinformatic file formats

    biodatageeks/datafusion-bio-formats's past year of commit activity
    Rust 9 5 20 25 Updated Nov 6, 2026
  • vepyr-diffly Public
    biodatageeks/vepyr-diffly's past year of commit activity
    Python 1 0 0 0 Updated Nov 2, 2026
  • vepyr-plugins Public

    vepyr plugin manifests for cache builder

    biodatageeks/vepyr-plugins's past year of commit activity
    Python 3 Apache-2.0 0 0 1 Updated Oct 29, 2026
  • edugen-notebooks Public
    biodatageeks/edugen-notebooks's past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Oct 25, 2026
  • nf-prepare-vcf Public
    biodatageeks/nf-prepare-vcf's past year of commit activity
    Nextflow 1 GPL-3.0 0 0 0 Updated Oct 18, 2026
  • nf-rare-var-assoc Public
    biodatageeks/nf-rare-var-assoc's past year of commit activity
    Nextflow 3 GPL-3.0 0 0 0 Updated Oct 18, 2026
  • vepyr-porting-tests Public
    biodatageeks/vepyr-porting-tests's past year of commit activity
    Python 0 Apache-2.0 0 42 6 Updated Oct 10, 2026
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