bump qpx version

[daichengxin]

Pull Request

Description

Checklist

• Module follows nf-core standards
• main.nf includes process definition
• meta.yml includes complete documentation
• environment.yml specifies dependencies
• Tests are included
• Code is formatted (prettier)
• CI checks pass

Module Type

• New module
• Module update
• Bug fix
• Documentation

Related Issues

Closes #

Summary by CodeRabbit

• Chores
  • Updated QPX to version 1.1.2 across the DiANN and OpenMS consensus workflows.
  • Refreshed the associated container images and environment configurations for consistent execution.

[qodo-code-review]

Qodo reviews are paused for this user.

Troubleshooting steps vary by plan Learn more →

On a Teams plan?
Reviews resume once this user has a paid seat and their Git account is linked in Qodo.
Link Git account →

Using GitHub Enterprise Server, GitLab Self-Managed, or Bitbucket Data Center?
These require an Enterprise plan - Contact us
Contact us →

[coderabbitai]

No actionable comments were generated in the recent review. 🎉

ℹ️ Recent review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro Plus

Run ID: 5c7a830c-a91d-472e-b1b0-d4cf26f3d207

📥 Commits

Reviewing files that changed from the base of the PR and between a0742a8 and 05a02be.

📒 Files selected for processing (4)

• modules/bigbio/qpx/diann/environment.yml
• modules/bigbio/qpx/diann/main.nf
• modules/bigbio/qpx/openmsconsensus/environment.yml
• modules/bigbio/qpx/openmsconsensus/main.nf

---

📝 Walkthrough

Walkthrough

The DIANN and OpenMS consensus modules now use QPX version 1.1.2 in their pip dependencies and container image references.

Changes

QPX version update

Layer / File(s)	Summary
Align QPX dependencies and containers modules/bigbio/qpx/diann/environment.yml, modules/bigbio/qpx/diann/main.nf, modules/bigbio/qpx/openmsconsensus/environment.yml, modules/bigbio/qpx/openmsconsensus/main.nf	The DIANN and OpenMS consensus modules update QPX dependency pins and container images from 1.1.1 to 1.1.2. The OpenMS consensus comments also reference the new release.

Estimated code review effort: 1 (Trivial) | ~2 minutes

Possibly related PRs

• bigbio/nf-modules#38: Updates QPX versions in the same module.
• bigbio/nf-modules#45: Updates QPX from 1.1.1 to 1.1.2 in the same module configurations.

Suggested reviewers: ypriverol

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title clearly and concisely describes the main change: updating the QPX version.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands.}

[codacy-production]

Up to standards ✅

🟢 Issues 0 issues

Results:
0 new issues

View in Codacy

_{NEW Get contextual insights on your PRs based on Codacy's metrics, along with PR and Jira context, without leaving GitHub. Enable AI reviewer
TIP This summary will be updated as you push new changes.}