Skip to content

ci: bump the github-actions group across 1 directory with 5 updates - #82

Open
dependabot[bot] wants to merge 1 commit into
mainfrom
dependabot/github_actions/github-actions-f9ddad71f4
Open

ci: bump the github-actions group across 1 directory with 5 updates#82
dependabot[bot] wants to merge 1 commit into
mainfrom
dependabot/github_actions/github-actions-f9ddad71f4

Conversation

@dependabot

@dependabot dependabot Bot commented on behalf of github Sep 28, 2026

Copy link
Copy Markdown
Contributor

Bumps the github-actions group with 5 updates in the / directory:

Package From To
astral-sh/setup-uv 10.1.0 10.2.0
berntpopp/genefoundry-router/.github/workflows/_container-ci.yml 0.9.1 0.9.2
berntpopp/genefoundry-router/.github/workflows/_container-release.yml 0.9.1 0.9.2
github/codeql-action/init 4.38.0 4.38.2
github/codeql-action/analyze 4.38.0 4.38.2

Updates astral-sh/setup-uv from 10.1.0 to 10.2.0

Release notes

Sourced from astral-sh/setup-uv's releases.

v10.2.0 🌈 Disable automatic cache saves for merge queues

Changes

This release contains the known-checksum of the most recent uv releases and also disabled the uploading(saving) of the cache when in a merge queue since theses caches would almost never be used.

🚀 Enhancements

🧰 Maintenance

📚 Documentation

⬆️ Dependency updates

Commits

Updates berntpopp/genefoundry-router/.github/workflows/_container-ci.yml from 0.9.1 to 0.9.2

Release notes

Sourced from berntpopp/genefoundry-router/.github/workflows/_container-ci.yml's releases.

v0.9.2

Verified GeneFoundry research-use-only container release.

Changelog

Sourced from berntpopp/genefoundry-router/.github/workflows/_container-ci.yml's changelog.

Changelog

All notable changes to genefoundry-router are documented here.

[0.9.2] - 2026-09-18

Changed

  • Synchronized fleet application releases and canonical fleet provenance across all 22 federated backends following the fleet-wide Dependabot and security remediation campaign.
  • Consolidated runtime and dev dependencies (gunicorn 26.2.0, orjson 3.12.0, ruff 0.16.8, mypy 2.3.1).
  • Updated GitHub Actions pins across reusable and caller workflows (astral-sh/setup-uv v10.1.0, docker/setup-buildx-action v4.4.0, docker/build-push-action v7.4.0).

[0.9.1] - 2026-09-18

Changed

  • Consolidated dependency and action updates: bumped authlib to 1.8.0, pydantic to 2.13.5, typer to 0.27.2, ruff to 0.16.8, types-pyyaml to 6.0.12.20260906.
  • Bumped anchore/sbom-action to v0.24.2 and github/codeql-action to v4.38.0 across reusable container workflows.
  • Enabled Dependabot grouping for GitHub Actions and uv dependencies in .github/dependabot.yml.

[0.9.0] - 2026-09-06

Added

  • Added clinpgx-link backend (pharmacogenomics: CPIC, PharmGKB, PharmCAT) as the 22nd backend in servers.yaml.
  • Added canonical fleet provenance endpoints (GET /provenance and GET /api/fleet/provenance) serving verified database and release provenance for all 22 backends and 285 tools.
  • Generated ci/fleet-provenance.json and bundled genefoundry_router/data/fleet-provenance.json.
  • Added generator script scripts/gen_fleet_provenance.py and unit tests in tests/unit/test_provenance.py.

[0.8.7] - 2026-09-02

Changed

  • Regenerated the fleet release-evidence set (ci/fleet-application-releases.json, ci/release-candidate-inventory.json, genefoundry_router/data/fleet-baseline.json, ci/release-candidate-fleet.json) at identity fleet-2026-09-02-contract-remediation, captured against the live fleet (all 21 -link backends on their current releases) after the controller contract-remediation deploy/activation campaign. Closes #170.

[0.8.6] - 2026-09-02

Added

  • Release configuration: optional data.schema_compatibility in container-release.json — the data schema versions the application can serve, declared in every data mode as fleet identifiers ("4", "5.1", "schema-6"). The release workflow already projected the field into the published manifest, but ReleaseConfig's data models forbid extra keys, so a repository that declared it failed validate-config with "Extra inputs are not permitted" and every data-bearing manifest in the fleet published "schema_compatibility": []. The fleet controller's data attestation requires the attested schema version to be a member of

... (truncated)

Commits

Updates berntpopp/genefoundry-router/.github/workflows/_container-release.yml from 0.9.1 to 0.9.2

Release notes

Sourced from berntpopp/genefoundry-router/.github/workflows/_container-release.yml's releases.

v0.9.2

Verified GeneFoundry research-use-only container release.

Changelog

Sourced from berntpopp/genefoundry-router/.github/workflows/_container-release.yml's changelog.

Changelog

All notable changes to genefoundry-router are documented here.

[0.9.2] - 2026-09-18

Changed

  • Synchronized fleet application releases and canonical fleet provenance across all 22 federated backends following the fleet-wide Dependabot and security remediation campaign.
  • Consolidated runtime and dev dependencies (gunicorn 26.2.0, orjson 3.12.0, ruff 0.16.8, mypy 2.3.1).
  • Updated GitHub Actions pins across reusable and caller workflows (astral-sh/setup-uv v10.1.0, docker/setup-buildx-action v4.4.0, docker/build-push-action v7.4.0).

[0.9.1] - 2026-09-18

Changed

  • Consolidated dependency and action updates: bumped authlib to 1.8.0, pydantic to 2.13.5, typer to 0.27.2, ruff to 0.16.8, types-pyyaml to 6.0.12.20260906.
  • Bumped anchore/sbom-action to v0.24.2 and github/codeql-action to v4.38.0 across reusable container workflows.
  • Enabled Dependabot grouping for GitHub Actions and uv dependencies in .github/dependabot.yml.

[0.9.0] - 2026-09-06

Added

  • Added clinpgx-link backend (pharmacogenomics: CPIC, PharmGKB, PharmCAT) as the 22nd backend in servers.yaml.
  • Added canonical fleet provenance endpoints (GET /provenance and GET /api/fleet/provenance) serving verified database and release provenance for all 22 backends and 285 tools.
  • Generated ci/fleet-provenance.json and bundled genefoundry_router/data/fleet-provenance.json.
  • Added generator script scripts/gen_fleet_provenance.py and unit tests in tests/unit/test_provenance.py.

[0.8.7] - 2026-09-02

Changed

  • Regenerated the fleet release-evidence set (ci/fleet-application-releases.json, ci/release-candidate-inventory.json, genefoundry_router/data/fleet-baseline.json, ci/release-candidate-fleet.json) at identity fleet-2026-09-02-contract-remediation, captured against the live fleet (all 21 -link backends on their current releases) after the controller contract-remediation deploy/activation campaign. Closes #170.

[0.8.6] - 2026-09-02

Added

  • Release configuration: optional data.schema_compatibility in container-release.json — the data schema versions the application can serve, declared in every data mode as fleet identifiers ("4", "5.1", "schema-6"). The release workflow already projected the field into the published manifest, but ReleaseConfig's data models forbid extra keys, so a repository that declared it failed validate-config with "Extra inputs are not permitted" and every data-bearing manifest in the fleet published "schema_compatibility": []. The fleet controller's data attestation requires the attested schema version to be a member of

... (truncated)

Commits

Updates github/codeql-action/init from 4.38.0 to 4.38.2

Release notes

Sourced from github/codeql-action/init's releases.

v4.38.2

  • Update default CodeQL bundle version to 2.27.1. #4160

v4.38.1

  • The CodeQL Action now has experimental support for CodeQL releases for which per-language bundles are available. Per-language bundles support analysis for a single language and are therefore smaller than the combined bundles that allow analysis for all supported languages. As a result, per-language bundles take up less space on disk and are faster to download. We expect to roll this change out to everyone in the coming weeks. #4146
Changelog

Sourced from github/codeql-action/init's changelog.

CodeQL Action Changelog

See the releases page for the relevant changes to the CodeQL CLI and language packs.

[UNRELEASED]

No user facing changes.

4.38.2 - 24 Sept 2026

  • Update default CodeQL bundle version to 2.27.1. #4160

4.38.1 - 18 Sept 2026

  • The CodeQL Action now has experimental support for CodeQL releases for which per-language bundles are available. Per-language bundles support analysis for a single language and are therefore smaller than the combined bundles that allow analysis for all supported languages. As a result, per-language bundles take up less space on disk and are faster to download. We expect to roll this change out to everyone in the coming weeks. #4146

4.38.0 - 09 Sept 2026

  • On GitHub-hosted runners, the CodeQL Action now deletes unused CodeQL bundles from the toolcache before downloading a different bundle, which frees up disk space for the analysis. We expect to roll this change out to everyone in September. #4124
  • The CodeQL Action now supports CodeQL releases that are compatible with Linux Arm64 and downloads the native linux-arm64 CodeQL bundle when available. #4072
  • Update default CodeQL bundle version to 2.27.0. #4129

4.37.9 - 26 Aug 2026

  • Update default CodeQL bundle version to 2.26.4. #4106

4.37.8 - 21 Aug 2026

No user facing changes.

4.37.7 - 13 Aug 2026

  • Update default CodeQL bundle version to 2.26.3. #4085

4.37.6 - 04 Aug 2026

  • Changed the default filepath for the new remote file address format that was introduced in CodeQL Action 4.37.0 / 3.37.0 to .github/codeql-config.yml to align it with the suggested path that is used elsewhere. #4070

4.37.5 - 03 Aug 2026

  • Fixed a bug where a network error while streaming the download of the CodeQL bundle could terminate the init Action instead of falling back to downloading the bundle before extracting it. #4061

4.37.4 - 29 Jul 2026

  • This version of the CodeQL Action adds support for the tools input for the codeql-action/init step to be specified using a github-codeql-tools repository property. This feature will gradually be rolled out following the release of this version. Once rolled out, this allows for the CodeQL CLI version that is used in GitHub-managed workflows, such as Default Setup, to be set to a custom value. For example, customers who run into issues with rate limits when a new CodeQL CLI version is released can set the value to toolcache to always use the CodeQL CLI version that is available in the runner toolcache. For Advanced Setup workflows, the value provided for tools in the workflow definition always takes precedence unless the value of the repository property starts with !. #4037
  • Update default CodeQL bundle version to 2.26.2. #4051

4.37.3 - 22 Jul 2026

No user facing changes.

... (truncated)

Commits
  • 2892aa5 Merge pull request #4168 from github/update-v4.38.2-a6ef2c96f
  • 8ad03a3 Trigger workflows
  • 98af865 Update changelog for v4.38.2
  • a6ef2c9 Merge pull request #4156 from github/mario-campos/fix-validate-cmd
  • 1ef28a1 Merge pull request #4166 from github/dependabot/github_actions/dot-github/wor...
  • 26cb08b Merge pull request #4163 from github/mbg/fix-getCommitOid-stubs
  • f035ce3 Merge pull request #4165 from github/dependabot/npm_and_yarn/npm-minor-8eaed9...
  • 5e4e255 Rebuild
  • b13f5f4 Bump ruby/setup-ruby
  • c87fe57 Rebuild
  • Additional commits viewable in compare view

Updates github/codeql-action/analyze from 4.38.0 to 4.38.2

Release notes

Sourced from github/codeql-action/analyze's releases.

v4.38.2

  • Update default CodeQL bundle version to 2.27.1. #4160

v4.38.1

  • The CodeQL Action now has experimental support for CodeQL releases for which per-language bundles are available. Per-language bundles support analysis for a single language and are therefore smaller than the combined bundles that allow analysis for all supported languages. As a result, per-language bundles take up less space on disk and are faster to download. We expect to roll this change out to everyone in the coming weeks. #4146
Changelog

Sourced from github/codeql-action/analyze's changelog.

CodeQL Action Changelog

See the releases page for the relevant changes to the CodeQL CLI and language packs.

[UNRELEASED]

No user facing changes.

4.38.2 - 24 Sept 2026

  • Update default CodeQL bundle version to 2.27.1. #4160

4.38.1 - 18 Sept 2026

  • The CodeQL Action now has experimental support for CodeQL releases for which per-language bundles are available. Per-language bundles support analysis for a single language and are therefore smaller than the combined bundles that allow analysis for all supported languages. As a result, per-language bundles take up less space on disk and are faster to download. We expect to roll this change out to everyone in the coming weeks. #4146

4.38.0 - 09 Sept 2026

  • On GitHub-hosted runners, the CodeQL Action now deletes unused CodeQL bundles from the toolcache before downloading a different bundle, which frees up disk space for the analysis. We expect to roll this change out to everyone in September. #4124
  • The CodeQL Action now supports CodeQL releases that are compatible with Linux Arm64 and downloads the native linux-arm64 CodeQL bundle when available. #4072
  • Update default CodeQL bundle version to 2.27.0. #4129

4.37.9 - 26 Aug 2026

  • Update default CodeQL bundle version to 2.26.4. #4106

4.37.8 - 21 Aug 2026

No user facing changes.

4.37.7 - 13 Aug 2026

  • Update default CodeQL bundle version to 2.26.3. #4085

4.37.6 - 04 Aug 2026

  • Changed the default filepath for the new remote file address format that was introduced in CodeQL Action 4.37.0 / 3.37.0 to .github/codeql-config.yml to align it with the suggested path that is used elsewhere. #4070

4.37.5 - 03 Aug 2026

  • Fixed a bug where a network error while streaming the download of the CodeQL bundle could terminate the init Action instead of falling back to downloading the bundle before extracting it. #4061

4.37.4 - 29 Jul 2026

  • This version of the CodeQL Action adds support for the tools input for the codeql-action/init step to be specified using a github-codeql-tools repository property. This feature will gradually be rolled out following the release of this version. Once rolled out, this allows for the CodeQL CLI version that is used in GitHub-managed workflows, such as Default Setup, to be set to a custom value. For example, customers who run into issues with rate limits when a new CodeQL CLI version is released can set the value to toolcache to always use the CodeQL CLI version that is available in the runner toolcache. For Advanced Setup workflows, the value provided for tools in the workflow definition always takes precedence unless the value of the repository property starts with !. #4037
  • Update default CodeQL bundle version to 2.26.2. #4051

4.37.3 - 22 Jul 2026

No user facing changes.

... (truncated)

Commits
  • 2892aa5 Merge pull request #4168 from github/update-v4.38.2-a6ef2c96f
  • 8ad03a3 Trigger workflows
  • 98af865 Update changelog for v4.38.2
  • a6ef2c9 Merge pull request #4156 from github/mario-campos/fix-validate-cmd
  • 1ef28a1 Merge pull request #4166 from github/dependabot/github_actions/dot-github/wor...
  • 26cb08b Merge pull request #4163 from github/mbg/fix-getCommitOid-stubs
  • f035ce3 Merge pull request #4165 from github/dependabot/npm_and_yarn/npm-minor-8eaed9...
  • 5e4e255 Rebuild
  • b13f5f4 Bump ruby/setup-ruby
  • c87fe57 Rebuild
  • Additional commits viewable in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
  • @dependabot ignore <dependency name> major version will close this group update PR and stop Dependabot creating any more for the specific dependency's major version (unless you unignore this specific dependency's major version or upgrade to it yourself)
  • @dependabot ignore <dependency name> minor version will close this group update PR and stop Dependabot creating any more for the specific dependency's minor version (unless you unignore this specific dependency's minor version or upgrade to it yourself)
  • @dependabot ignore <dependency name> will close this group update PR and stop Dependabot creating any more for the specific dependency (unless you unignore this specific dependency or upgrade to it yourself)
  • @dependabot unignore <dependency name> will remove all of the ignore conditions of the specified dependency
  • @dependabot unignore <dependency name> <ignore condition> will remove the ignore condition of the specified dependency and ignore conditions

@dependabot
ci: bump the github-actions group across 1 directory with 5 updates
43d813c 
Bumps the github-actions group with 5 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [astral-sh/setup-uv](https://github.com/astral-sh/setup-uv) | `10.1.0` | `10.2.0` |
| [berntpopp/genefoundry-router/.github/workflows/_container-ci.yml](https://github.com/berntpopp/genefoundry-router) | `0.9.1` | `0.9.2` |
| [berntpopp/genefoundry-router/.github/workflows/_container-release.yml](https://github.com/berntpopp/genefoundry-router) | `0.9.1` | `0.9.2` |
| [github/codeql-action/init](https://github.com/github/codeql-action) | `4.38.0` | `4.38.2` |
| [github/codeql-action/analyze](https://github.com/github/codeql-action) | `4.38.0` | `4.38.2` |



Updates `astral-sh/setup-uv` from 10.1.0 to 10.2.0
- [Release notes](https://github.com/astral-sh/setup-uv/releases)
- [Commits](astral-sh/setup-uv@bec219d...c18668a)

Updates `berntpopp/genefoundry-router/.github/workflows/_container-ci.yml` from 0.9.1 to 0.9.2
- [Release notes](https://github.com/berntpopp/genefoundry-router/releases)
- [Changelog](https://github.com/berntpopp/genefoundry-router/blob/main/CHANGELOG.md)
- [Commits](berntpopp/genefoundry-router@adfc1cf...c68eb8e)

Updates `berntpopp/genefoundry-router/.github/workflows/_container-release.yml` from 0.9.1 to 0.9.2
- [Release notes](https://github.com/berntpopp/genefoundry-router/releases)
- [Changelog](https://github.com/berntpopp/genefoundry-router/blob/main/CHANGELOG.md)
- [Commits](berntpopp/genefoundry-router@adfc1cf...c68eb8e)

Updates `github/codeql-action/init` from 4.38.0 to 4.38.2
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@b96794f...2892aa5)

Updates `github/codeql-action/analyze` from 4.38.0 to 4.38.2
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@b96794f...2892aa5)

---
updated-dependencies:
- dependency-name: astral-sh/setup-uv
  dependency-version: 10.2.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: github-actions
- dependency-name: berntpopp/genefoundry-router/.github/workflows/_container-ci.yml
  dependency-version: 0.9.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: berntpopp/genefoundry-router/.github/workflows/_container-release.yml
  dependency-version: 0.9.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: github/codeql-action/init
  dependency-version: 4.38.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: github/codeql-action/analyze
  dependency-version: 4.38.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code labels Sep 28, 2026

This branch has not been deployed

No deployments
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

No reviews

Assignees

No one assigned

Labels

dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code

Projects

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

0 participants