UserGuide: Requirements

Libraries used by askoR.

CRAN Libraries

install.packages("gplots")
install.packages("ggplot2")
install.packages("ggrepel")
install.packages("ggfortify")
install.packages("gghalves")
install.packages("grid")
install.packages("tidyverse")
install.packages("stringr")
install.packages("optparse")
install.packages("circlize")
install.packages("statmod")
install.packages("RColorBrewer")
install.packages("VennDiagram")
install.packages("UpSetR")
install.packages("cowplot")
install.packages("corrplot")
install.packages("lazyData")
install.packages("viridis")

Bioconductor Libraries

install.packages("BiocManager")
BiocManager::install("limma")
BiocManager::install("edgeR")
BiocManager::install("DESeq2")
BiocManager::install("shiny")
BiocManager::install("Glimma")
BiocManager::install("Rgraphviz")
BiocManager::install("ComplexHeatmap")
BiocManager::install("topGO")
BiocManager::install("goSTAG")
BiocManager::install("coseq")