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v2.0 of zeus21! - #41

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EmilieThelie wants to merge 125 commits into

mainfrom

zeus21_hack

Open

v2.0 of zeus21!#41
EmilieThelie wants to merge 125 commits into
mainfrom
zeus21_hack

Commits on Feb 11, 2026
- added halo mass depenent min_MUV to P(MUV|Mh) functions for calculating UVLFs & bias
  ebregou
  committed
  37633b6
- fixed bug
  ebregou
  committed
  9eabc5d
Commits on Apr 13, 2026
- Implemented Rodriguez-Puebla 16 accretion
  ebregou
  committed
  76eedce
- minor formatting changes
  ebregou
  committed
  7b4ecce
Commits on Apr 30, 2026
- v2.0 of zeus21!
  EmilieThelie
  committed
  216306e
- Small fix.
  EmilieThelie
  committed
  dec055d
- First pass at correlations.py
  JulianBMunoz
  committed
  9478d6e
- Update inputs.py
  JulianBMunoz
  committed
  35bc3a9
- Reionization added.
  EmilieThelie
  committed
  3a8389a
- Reionization added.
  EmilieThelie
  committed
  ef8b3e9
- Update tests to v2.0 API; fix np.trapz->trapezoid and SFR_II/III calls in UVLFs.py
  
  Copilot
  and
  JulianBMunoz
  authored
  97a4153
Commits on May 1, 2026
- Add tqdm to requirements.txt to fix missing dependency in CI
  JulianBMunoz
  committed
  496f161
- Update requirements.txt
  JulianBMunoz
  authored
  3e83932
- Remove SFR_III debugging step from python-tests.yml
  JulianBMunoz
  authored
  fcfb714
- Fixes for LW calls
  JulianBMunoz
  committed
  00b5baa
- Initial plan
  Copilot
  authored
  b14421c
- Merge remote-tracking branch 'origin/zeus21_hack' into copilot/fix-unit-tests-zooc21
  Copilot
  authored
  3e0d882
- Fix failing tests: update to new API, fix np.trapz, kmax_CLASS and _clumping issues
  
  Copilot
  and
  JulianBMunoz
  authored
  fb80ef4
- Updated LFs
  JulianBMunoz
  committed
  77605a2
- Import z21_utilities in inputs.py
  JulianBMunoz
  authored
  3a9f4b1
- Merge branch 'zeus21_hack' into copilot/fix-unit-tests-zooc21
  JulianBMunoz
  committed
  b2fe745
- Update import path for UVLF functions
  JulianBMunoz
  authored
  594df96
- Update sfrd.py
  JulianBMunoz
  committed
  8213852
- Small fix in correlations.py.
  EmilieThelie
  committed
  519c583
- Small fix for LFs.
  EmilieThelie
  committed
  8c9ca03
- Update import path for UVLF functions
  slibanore
  committed
  4db3b32
- Maps included.
  EmilieThelie
  committed
  3256f2b
- Small fix.
  EmilieThelie
  committed
  ad343e3
- Small fix in LF.
  EmilieThelie
  committed
  5c76131
Commits on May 6, 2026
- Merge remote-tracking branch 'upstream/zeus21_hack' into Yung24_halo_accretion_merged
  ebregou
  committed
  1370555
- Merge pull request #43 from ebregou/RP16_halo_accretion
  JulianBMunoz
  authored
  9e24c70
Commits on Jun 1, 2026
- Updated comments in User_Parameters.
  EmilieThelie
  committed
  04d1a71
- Added comments in Cosmo_Parameters.
  EmilieThelie
  committed
  7bbeb82
Commits on Jun 3, 2026
- Small fix.
  EmilieThelie
  committed
  b036611
- Comments to Astro_Parameters and LF_Parameters.
  EmilieThelie
  committed
  639ac47
Commits on Jun 4, 2026
- Changed the T21 maps class to what oLIMpus does.
  EmilieThelie
  committed
  d931466
Commits on Jun 9, 2026
- added comments and documentation on cosmology.py
  slibanore
  committed
  1897fed
- added redshift-time conversion functions to the cosmology.py file
  slibanore
  committed
  474a1f1
- removed double function
  slibanore
  committed
  e1c9c57
Commits on Jun 11, 2026
- added comments to sfrd
  slibanore
  committed
  b0ba8fa
- added comments to T21_coeff
  slibanore
  committed
  311f43c
Commits on Jun 12, 2026
- Refactor docstrings for SED and Green's functions
  JulianBMunoz
  authored
  125edf5
- Add normLHa_ZIMF and alphanormLHa_ZIMF parameters
  JulianBMunoz
  authored
  f802861
- Include method documentation
  JulianBMunoz
  authored
  908c8dc
- New Baryonic Power Spectra
  hcruz1998
  committed
  2d7c259
- New Baryonic Power Spectra
  hcruz1998
  committed
  31537cb
- Indented SED.py to make tests run
  hcruz1998
  committed
  bf88eab
- Updated Pop III 21-cm power spectra to include delta --> delta_b modification
  hcruz1998
  committed
  80797b9
- Fixed typos and deleted acausal M_mol behavior, only used when comparing results against a deprecated version of 21cmFAST
  hcruz1998
  committed
  4915114
Commits on Jun 13, 2026
- relabeled input "zmin_T21" into "zmin"
  slibanore
  committed
  b452ff9
Commits on Jun 14, 2026
- typo correction in sfrd
  slibanore
  committed
  e01c6f9
- moved get_Pk_from_xi and get_list_PS in z21_utilities
  slibanore
  committed
  84a9531
Commits on Jun 15, 2026
- added check on flags in reionization_maps
  slibanore
  committed
  512f29a
- corrected T21 power spectrum amplitude in maps computation
  slibanore
  committed
  e5d3ed4
- corrected amplitude in PdeltaT21 in maps
  slibanore
  committed
  8f08a36
- changed User_Parameters-->UserParams and Cosmo_Parameters-->CosmoParams
  slibanore
  committed
  d606b0a
- corrected typo in comment
  slibanore
  committed
  2dfc562
- corrected typo in comment
  slibanore
  committed
  1a0f585
- corrected amplitude power spectra in maps
  slibanore
  committed
  b36bdf5
Commits on Jun 16, 2026
- fixed Z_Init and SFRD_Init initialization in T21coeff
  slibanore
  committed
  b2cbba4
- Fixed Rs_min=0.5 in reionization.py
  EmilieThelie
  committed
  bcaed03
- Setting analytic_Q to have Rmin=Rs[0]
  EmilieThelie
  committed
  b7ac480
- Added comments in z21_utilities.
  EmilieThelie
  committed
  9efb82e
- Fixed tests (UVLFs still needs to be done).
  EmilieThelie
  committed
  dc0ef2d
- Fixed some tests and commented out some other.
  EmilieThelie
  committed
  0c7bbaf
- Changed tests so VCB avg and sigmaVCB are now numbers between 0 and 1.
  hcruz1998
  committed
  e73e906
- Changed tests so VCB avg and sigmaVCB are now numbers between 0 and 10.
  hcruz1998
  committed
  fb6c230
Commits on Jun 17, 2026
- Pop III ACH fixed in sfrd.py and implemented in LFs.py
  alessandra-venditti
  committed
  e5406f3
- Fix renamed UserParams.zmin after rebase
  alessandra-venditti
  committed
  e449ce4
- maps T21: corrected use of the MASSW_PARTIAL and PARTIAL flags
  slibanore
  committed
  18704a4
- Comments for reionization.py and maps.py
  yonboyage
  committed
  74b73a3
- fixed comment on Salpha_exp
  slibanore
  committed
  a537f90
- re-insert redshift_to_chi function
  slibanore
  committed
  0110450
Commits on Jun 18, 2026
- added function to smooth the T21 and xHI boxes (over single R)
  slibanore
  committed
  98a15dc
- fixed smoothed box in T21maps
  slibanore
  committed
  08f84f2
- fixed smoothing in t21 maps
  slibanore
  committed
  5afa34c
- fixed smoothing on the T21 map -- to check z dimension
  slibanore
  committed
  45d41df
- added smooth flag to maps computation
  slibanore
  committed
  ce4c059
- consistency with use_xHII_maps
  slibanore
  committed
  a0f0962
Commits on Jun 19, 2026
- in cosmology, added functions to compute z(chi) and chi(z) for the user
  slibanore
  committed
  c8a3080
Commits on Jun 28, 2026
- removed Hofzint since it was not computing H(z) and it is never used
  slibanore
  committed
  447f6e9
Commits on Jun 29, 2026
- Mhmin and Mhmax moved to input cosmo params and then assigned inside the HMF
  slibanore
  committed
  1a60f66
Commits on Jun 30, 2026
- Updated 21-cm tutorial.
  EmilieThelie
  committed
  b625058
- Add names to headers and improved headers.
  EmilieThelie
  committed
  e8c6578
- Moved tutorials to a tutorials folder.
  EmilieThelie
  committed
  a211177
- Create readthedocs documentation.
  EmilieThelie
  committed
  3b26c74
Commits on Jul 1, 2026
- Minor comment + flag consolidation
  yonboyage
  committed
  fd61c75
- Replaced Mmol in-place operation so numpy broadcasting can work
  hcruz1998
  committed
  e7e6ef2
Commits on Jul 2, 2026
- Dark mode for the doc.
  EmilieThelie
  committed
  9dbcb59
- Dark mode for the doc
  EmilieThelie
  committed
  a2f622d
- Best try at dark theme
  EmilieThelie
  committed
  4923b0f
- Fix for dark-mode doc
  EmilieThelie
  committed
  3fb9a70
- Made a proper documentation!
  EmilieThelie
  committed
  2c85855
- Fix for readthedocs.
  EmilieThelie
  committed
  b3523e0
- Fix for readthedocs.
  EmilieThelie
  committed
  fb152d0
- Fix for readthedocs.
  EmilieThelie
  committed
  9fa9fdc
- Fix for readthedocs.
  EmilieThelie
  committed
  d3463da
- Fix for readthedocs.
  EmilieThelie
  committed
  fab81a2
Commits on Jul 3, 2026
- Fixes for the doc.
  EmilieThelie
  committed
  68719fb
- Fixes for the doc.
  EmilieThelie
  committed
  ca48d49
- Fixes for the docs.
  EmilieThelie
  committed
  36234dc
- Fixed calls to COMPUTE_MW_PARTIAL in T21maps
  EmilieThelie
  committed
  10455f7
- Fixed the doc.
  EmilieThelie
  committed
  20c188d
- Fixes for the doc.
  EmilieThelie
  committed
  7f595e0
Commits on Jul 5, 2026
- modified T21_maps: now it always compute the T21 maps using the volume averaged xHI, while it computes tau using the massweighted xHI
  slibanore
  committed
  8547917
- added flag COMPUTE_TAU in T21_maps
  slibanore
  committed
  51e1af2
- tau computation corrected in T21maps
  slibanore
  committed
  d3a9998
- typo fixed
  slibanore
  committed
  1d575fc
Commits on Jul 8, 2026
- updated UVLF tutorial, adding Pop IIIs, outputs yet to be adapted
  alessandra-venditti
  committed
  e27712e
- Output classes in LFs in place of dictionaries + alias retrieve for nested outputs as in T21_coefficients
  alessandra-venditti
  committed
  ed1d6ff
Commits on Aug 21, 2026
- updated maps tutorial -- to be checked!
  slibanore
  committed
  83cf877
- updated maps tutorial -- to be checked!
  slibanore
  committed
  a1a967f
Commits on Aug 23, 2026
- implemented test_SED -- to be checked!
  slibanore
  committed
  989ff30
Commits on Aug 27, 2026
- fixed T21maps so it can run more z
  slibanore
  committed
  14fc9da
- added auto-update of the version
  slibanore
  committed
  d38f2bb
- corrected file name
  slibanore
  committed
  b9b9484
- added print for the current version when importing
  slibanore
  committed
  f0d14e7
- added print for the current version when importing
  slibanore
  committed
  b3d9328
- COMPUTE_TAU flag requires massweighted computation
  slibanore
  committed
  a61e2bb
- fixed version
  slibanore
  committed
  b5b0c66
- added file to keep track of the current version
  slibanore
  committed
  8685047
- TEST
  slibanore
  committed
  2ad3d37
- TEST 2
  slibanore
  committed
  1f86685
Commits on Sep 23, 2026
- Added Eulerian vs Lagrangian Niondot
  yonboyage
  committed
  02b6b86
Commits on Oct 29, 2026
- Added patchy kSZ module with unit tests (work in progress, testing for binary ionization field
  alessandra-venditti
  committed
  00a3ab5

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