EEfinder is a tool/python package that automatizes several tasks related to identification of Endogenous Elements present on Eukaryotic Genomes.
Full documentation is hosted on Read the Docs: https://eefinder.readthedocs.io
If you use EEfinder in your research, please cite https://www.sciencedirect.com/science/article/pii/S2001037024003325:
Dias, Y. J. M., Dezordi, F. Z., & Wallau, G. L. (2024). EEFinder: A general-purpose tool for identification of bacterial and viral endogenized elements in eukaryotic genomes. Computational and Structural Biotechnology Journal. https://doi.org/10.1016/j.csbj.2024.10.012