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Nextflow 26 strict syntax fixes and lint CI - #10
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Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
- depth_policy: replace @field constants with zero-arg functions; C-style (long) casts -> 'as long' - concatenate_fastq: call local closure via asList.call(...) - sratools/fasterqdump: move errorStrategy/maxRetries directives above input/output sections depth_policy nf-tests (38) pass on both 25.04.0 and 26.10.0. Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
rdemko2332
self-requested a review
October 15, 2026 02:13
rdemko2332
approved these changes
Oct 15, 2026
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Summary
Syntax-only update for Nextflow 26 strict syntax; no behavior change.
nextflow lintCI via the sharedVEuPathDB/.githubreusable workflow.depth_policy nf-tests (38) pass on both 25.04.0 and 26.10.0.
Test plan
nextflow lintlocally on Nextflow 26.10.0: 0 errors🤖 Generated with Claude Code