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Nextflow 26 strict syntax fixes and lint CI - #5

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jbrestel merged 2 commits into
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nextflow26-strict-syntax
Oct 16, 2026
Merged

jbrestel merged 2 commits into
mainfrom
nextflow26-strict-syntax

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Summary

Syntax-only update for Nextflow 26 strict syntax; no behavior change.

  • Add nextflow lint CI via the shared VEuPathDB/.github reusable workflow.
  • Use container directive without assignment in wigToBigWig

Test plan

  • CI red on lint-only commit (1 error, 3 warnings), green with fixes (3 warnings)
  • nextflow lint locally on Nextflow 26.10.0: 0 errors

🤖 Generated with Claude Code

jbrestel and others added 2 commits October 13, 2026 16:32
Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
- Use container directive without assignment in wigToBigWig

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
@jbrestel
jbrestel merged commit d6393d9 into main Oct 16, 2026
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2 participants