Issues

• find fast high-precision float library

  Feature

  UC-Davis-molecular-computing/batss#17 · Filter by author dave-doty opened on Aug 11, 2026

• sample_collision panics for every r > 0: a zero run length is legitimate, but asserted impossible

  UC-Davis-molecular-computing/batss#16 · Filter by author dave-doty opened on Aug 11, 2026

• Collision sampler panics: f128 escalation guard protects a different quantity than the assertion tests

  UC-Davis-molecular-computing/batss#15 · Filter by author dave-doty opened on Aug 10, 2026
  3

• make Gillespie switching deterministic

  UC-Davis-molecular-computing/batss#14 · Filter by author dave-doty opened on Jul 11, 2026

• fallback to ppsim for CRNs with nonpositive generativity

  UC-Davis-molecular-computing/batss#12 · Filter by author dave-doty opened on Jul 10, 2026

• create rebop.Gillespie object once in BatchSimulator constructor

  UC-Davis-molecular-computing/batss#11 · Filter by author dave-doty opened on Jun 25, 2026

• Don't compute the counts of different null reactions

  UC-Davis-molecular-computing/batss#8 · Filter by author JoshPetrack opened on Aug 4, 2025

• choose correct max_wallclock_time

  invalid
  UC-Davis-molecular-computing/batss#6 · Filter by author dave-doty opened on Jul 16, 2025

• Parallelize batch sampling

  UC-Davis-molecular-computing/batss#4 · Filter by author JoshPetrack opened on Jul 7, 2025

• reset should alter rate constants if volume is None

  invalid
  UC-Davis-molecular-computing/batss#3 · Filter by author dave-doty opened on Jul 7, 2025

• Implement multibatching for CRNs

  UC-Davis-molecular-computing/batss#1 · Filter by author JoshPetrack opened on Jul 6, 2025
  2