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Draft the PLOS Comp Bio manuscript
manuscriptPaper writing milestonePaper writing milestoneTo DoNot started yetNot started yetStatus: Open.#64 In SamOliveiraLab/partaker-v2;Acquire time series dataset with cell and EPS channels
dataData acquisition milestoneData acquisition milestoneIn ProgressActively being worked onActively being worked onStatus: Open.#63 In SamOliveiraLab/partaker-v2;Check Serra et al. supplementary data for usable images
dataData acquisition milestoneData acquisition milestoneIn ProgressActively being worked onActively being worked onStatus: Open.#62 In SamOliveiraLab/partaker-v2;Literature search: biofilm quantification from phase contrast
dataData acquisition milestoneData acquisition milestoneIn ProgressActively being worked onActively being worked onStatus: Open.#61 In SamOliveiraLab/partaker-v2;Track how all three levels co-evolve over time
correlationThree-level correlation milestoneThree-level correlation milestoneTo DoNot started yetNot started yetStatus: Open.#60 In SamOliveiraLab/partaker-v2;Compare edge cells vs center cells
correlationThree-level correlation milestoneThree-level correlation milestoneTo DoNot started yetNot started yetStatus: Open.#59 In SamOliveiraLab/partaker-v2;Correlate cell behavior with local EPS concentration
correlationThree-level correlation milestoneThree-level correlation milestoneTo DoNot started yetNot started yetStatus: Open.#58 In SamOliveiraLab/partaker-v2;CSV export for per-cell feature table
neighborhoodSingle cell neighborhood milestoneSingle cell neighborhood milestoneTo DoNot started yetNot started yetStatus: Open.#57 In SamOliveiraLab/partaker-v2;Mine BiofilmQ's 49 parameters for metric ideas
neighborhoodSingle cell neighborhood milestoneSingle cell neighborhood milestoneTo DoNot started yetNot started yetStatus: Open.#56 In SamOliveiraLab/partaker-v2;Build per-cell neighborhood metrics (the novel contribution)
neighborhoodSingle cell neighborhood milestoneSingle cell neighborhood milestoneTo DoNot started yetNot started yetStatus: Open.#55 In SamOliveiraLab/partaker-v2;Map EPS concentration over time
epsEPS analysis milestoneEPS analysis milestoneTo DoNot started yetNot started yetStatus: Open.#54 In SamOliveiraLab/partaker-v2;Apply Paula clustering method to EPS channel
epsEPS analysis milestoneEPS analysis milestoneTo DoNot started yetNot started yetStatus: Open.#53 In SamOliveiraLab/partaker-v2;