Issues

• TypeError: 'NoneType' object is not callable

  STOmics/Stereopy#454 · Filter by author sun-fei2026 opened on Jul 1, 2026
  2

• stereo.io.stereo_to_anndata After adding the HE staining image

  STOmics/Stereopy#453 · Filter by author carrot881216 opened on Jun 18, 2026
  2

• Does stereopy perform differential analysis on two selected cell populations or tissue regions?

  STOmics/Stereopy#452 · Filter by author sun-fei2026 opened on Jun 15, 2026
  1

• Download the reference data for SingleR for stereopy

  STOmics/Stereopy#451 · Filter by author synatkeamsk opened on Jun 12, 2026
  1

• How to display the expression levels of a specific gene in a spatial clustering plot?

  STOmics/Stereopy#450 · Filter by author sun-fei2026 opened on Jun 12, 2026
  1

• Annotation general question

  STOmics/Stereopy#449 · Filter by author synatkeamsk opened on Jun 11, 2026
  1

• Perform SingleR in batch effect workflow

  STOmics/Stereopy#448 · Filter by author synatkeamsk opened on May 23, 2026
  2

• Which Python version to use?

  STOmics/Stereopy#416 · Filter by author vladimirkovacevic opened on Jan 30, 2026
  2

• single R annotation with GPU lacking confidence scores

  STOmics/Stereopy#411 · Filter by author vraghu90 opened on Jan 14, 2026
  1

• Installation of Stereopy >=1.6.0 using Conda

  STOmics/Stereopy#410 · Filter by author ViHammer opened on Jan 8, 2026
  1

• Installation Failure - No such file or directory: 'requirements.txt'

  STOmics/Stereopy#409 · Filter by author patrickCNMartin opened on Dec 17, 2025
  1

• Would it be possible to add gene_name_index parameter to read_h5ad function?

  STOmics/Stereopy#408 · Filter by author shen-lanlan opened on Dec 12, 2025
  1

• Question about plt.paga_time_series_plot Parameters

  STOmics/Stereopy#401 · Filter by author WangyangLiu-Bio opened on Oct 13, 2025
  2

• Request for RTX 5070 GPU Support and CUDA 12.x Compatibility

  STOmics/Stereopy#399 · Filter by author Crazylittleape opened on Sep 23, 2025
  1

• High RAM usage and lack of multi-GPU support in spatial_alignment

  STOmics/Stereopy#396 · Filter by author Yifan-Mo opened on Aug 25, 2025
  3

• gefpy version issue

  STOmics/Stereopy#395 · Filter by author nsohail19 opened on Aug 6, 2025
  2

• About the time consumption of umap for integrated data

  STOmics/Stereopy#393 · Filter by author CCprinc opened on Jul 31, 2025
  1

• Regarding the issue of using gef for SingleR annotation

  STOmics/Stereopy#391 · Filter by author oranges7 opened on Jul 9, 2025
  4

• CellCut failure

  STOmics/Stereopy#390 · Filter by author ZixuanHuang-Joy opened on Jun 17, 2025
  4

• Problems with h5ad2rds.R

  STOmics/Stereopy#387 · Filter by author RookieNiu opened on May 15, 2025
  1

• chunk processing for tl.spatial_alignment?

  STOmics/Stereopy#376 · Filter by author lililab-uwyo opened on Mar 19, 2025
  1

• Strange Error When Running Multi-Sample Integration Analysis

  STOmics/Stereopy#374 · Filter by author zonzero opened on Mar 16, 2025
  2

• Data conversion for lasso files

  STOmics/Stereopy#373 · Filter by author WeijiaSu opened on Mar 11, 2025
  2

• interact_spatial_scatter notworking

  STOmics/Stereopy#330 · Filter by author solivehong opened on Sep 10, 2024
  6

• SingleR diagnostics about the annotation process

  STOmics/Stereopy#329 · Filter by author BioRB opened on Sep 10, 2024
  1