methtuple has in principle support for soft-clipped reads as of v1.3. However, as Bismark does not allow soft-clipped reads this hasn't been tested. I will test this more thoroughly once I am update methtuple to use an aligner that allows soft-clips. See also the now-closed #45
methtuplehas in principle support for soft-clipped reads as ofv1.3. However, as Bismark does not allow soft-clipped reads this hasn't been tested. I will test this more thoroughly once I am updatemethtupleto use an aligner that allows soft-clips. See also the now-closed #45