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ATACseq-Snakemake
ATACseq-Snakemake PublicForked from porchard/ATACseq-Snakemake
Standard Parker Lab ATAC-seq processing pipeline in Snakemake form
Repositories
- FAP_paper Public
Discovering stimulatory state specific type 2 diabetes GWAS mechanisms with single-cell multi-omics on iPSC-derived fibro-adipogenic progenitors
- muscle_nfr_nucQTL Public
- TSS_MPRA_2026 Public Forked from boseHere/TSS_MPRA_2025
Code used to run elastic net, generalized linear models, and MPRAnalyze sub-analyses and interaction model for Bose et. al. 2026 islet TSS MPRA paper. DOI: 10.1101/2025.10.13.659964
- PanKbase-DEG-analysis Public Forked from hhvu0102/PanKbase-DEG-analysis
Collection of code and documentation to replicate islet DEG analysis on PanKbase.
- PanKbase-scRNA-seq Public Forked from hhvu0102/PanKbase-scRNA-seq
Collection of code and documentation to replicate islet single cell map on PanKbase.
- PanKgraph-finemap-coloc Public Forked from hhvu0102/PanKgraph-finemap-coloc
Collection of code and documentation to conduct fine-mapping and colocalization analysis for PanKbase and PanKgraph.
- albanus_2020_nih_islets_sn_t1d Public
snATAC-seq + scRNA-seq analyses of healthy and AAB+ human islets
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