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docs: update METHODS.md version tag and annotate 7-seed expansion - #79
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…l expansion The methods document was last updated for PRs #47-54. Since then the synthesis pool was expanded from 5 to 7 scaffold families (SEED-006 through SEED-009 in expansion PRs; SEED-001 re-entered in PR #72 via face_segregation_bonus). Changes: - Version line: "PRs #47-54" → "PRs #47-78" - Generation section: added blockquote note distinguishing the initial 5-seed benchmark run (383 variants, 87-candidate eval set, AUROC 0.8420) from the current 7-seed synthesis pool (100 candidates) - No scoring formulas or benchmark numbers changed
AUROC 0.8420 was achieved in PR #72 (face_segregation_bonus), not in the initial 5-seed benchmark generation run. Clarify that the generation section describes the initial corpus and the AUROC figure reflects scoring improvements through PR #72. Also note that the 87-sequence eval set was finalized in PR #66.
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Summary
docs/METHODS.mdwas last updated for PRs #47–54. The synthesis pool subsequently expanded from 5 to 7 scaffold families (SEED-006 through SEED-009 in expansion PRs; SEED-001 magainin-1 re-entered in PR #72 via theface_segregation_bonus). Readers comparing the methods document to the current synthesis readiness report would see "5 seeds / 383 variants" vs "7 families / 100 candidates" with no explanation.Changes
PRs #47–54→PRs #47–78No scoring formulas, benchmark numbers, or pipeline logic changed.
Test plan
make test→ 1245 passed🤖 Generated with Claude Code