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BMBL-analysis-notebooks
BMBL-analysis-notebooks PublicA collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in sequencing data analysis.
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- ssKIND Public
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- IRIS3 Public
IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)
- BMBL-analysis-notebooks Public
A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in sequencing data analysis.
- ssKIND-collection-agents Public
- MedSAE Public Forked from MirageModi/MedSAE
MedSAE is an end-to-end pipeline for training top-k Sparse Autoencoders (SAEs) on hidden activations from medical LLMs (e.g., MedGemma-27B-Text-IT, OpenBioLLM-Llama3-70B) and analyzing how polysemous medical terms (e.g., discharge, failure, block) are represented in latent space.
- scRNAseq_cornea_MG53 Public
scRNA-seq analysis of MG53 knockout effects in mouse corneal injury (Project 19072-23)
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