Issues

• 0.7.0 conda installation needs a minimap2 downgrade to work

  NationalGenomicsInfrastructure/anglerfish#94 · Filter by author EdRyder1 opened on Jan 22, 2026
  2

• Can't build docker image from dockerfile

  NationalGenomicsInfrastructure/anglerfish#93 · Filter by author ClareRobin opened on Mar 25, 2025

• Strange truncation of fastq files when demultiplexing short Illumina inserts libraries

  NationalGenomicsInfrastructure/anglerfish#90 · Filter by author j0n0curry opened on Aug 27, 2024
  2

• add sample indexes to report

  NationalGenomicsInfrastructure/anglerfish#89 · Filter by author FranBonath opened on Aug 19, 2024
  2

• add more metadata in the anglerfish report

  enhancement
  NationalGenomicsInfrastructure/anglerfish#88 · Filter by author FranBonath opened on Aug 19, 2024 · 1.0.0
  3

• A more lenient lenient mode

  enhancement
  NationalGenomicsInfrastructure/anglerfish#80 · Filter by author remiolsen opened on Apr 4, 2024 · 1.0.0

• More opinionated checks and warnings pushed to the anglerfish report

  enhancement
  NationalGenomicsInfrastructure/anglerfish#79 · Filter by author remiolsen opened on Mar 13, 2024 · 1.0.0

• Update PyPi build-and-publish github action

  invalid
  NationalGenomicsInfrastructure/anglerfish#78 · Filter by author remiolsen opened on Feb 16, 2024

• Explore command should compare adaptor sequences and collapse results for identical ones

  NationalGenomicsInfrastructure/anglerfish#74 · Filter by author alneberg opened on Feb 13, 2024

• Tidy up paf stats and umatch and match counts

  bug
  NationalGenomicsInfrastructure/anglerfish#66 · Filter by author remiolsen opened on Jan 25, 2024 · 1.0.0

• Report the total number of unmatched reads

  enhancement
  NationalGenomicsInfrastructure/anglerfish#64 · Filter by author remiolsen opened on Jan 24, 2024 · 1.0.0

• Add support for .bam input

  enhancementlow priority
  NationalGenomicsInfrastructure/anglerfish#60 · Filter by author remiolsen opened on Jan 19, 2024

• Samplesheet-free mode

  enhancement
  NationalGenomicsInfrastructure/anglerfish#57 · Filter by author remiolsen opened on Jan 12, 2024 · 1.0.0
  1

• Write extensive documentation

  enhancement
  NationalGenomicsInfrastructure/anglerfish#51 · Filter by author remiolsen opened on Nov 28, 2023 · 1.0.0

• Parse ONT metadata from fastq files

  enhancementlow priority
  NationalGenomicsInfrastructure/anglerfish#46 · Filter by author remiolsen opened on Nov 2, 2023

• Use custom adaptor templates from command-line

  enhancement
  NationalGenomicsInfrastructure/anglerfish#42 · Filter by author remiolsen opened on Sep 13, 2023

• Output: Simulate illumina reads

  NationalGenomicsInfrastructure/anglerfish#8 · Filter by author ewels opened on Apr 16, 2020