All pull requests

Pull requests

• fix(output): match random-effect densities to parameters by linked id

  #1809·grantdadams opened Oct 3, 2026Contributor·4 tasks·

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• feat(maturity): add empirical maturity at age

  #1808·grantdadams opened Oct 3, 2026Contributor·4 tasks·

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• fix(fimsframe): reject duplicated or late weight_at_age rows

  #1807·grantdadams opened Oct 3, 2026Contributor·4 tasks·

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  1

• fix(interface): guard empty containers before dereferencing them

  #1805·grantdadams opened Oct 1, 2026Contributor·4 tasks·

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  4

• fix(docs): clarify logistic slope and double logistic inflection points

  #1800·grantdadams opened Oct 1, 2026Contributor·4 tasks·

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  5

• fix(interface): error from evaluate_process() on recruitment processes

  #1798·grantdadams opened Oct 1, 2026Contributor·4 tasks·

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• fix(fims_math): keep the double logistic descending limb above 0

  #1797·grantdadams opened Oct 1, 2026Contributor·4 tasks·

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• fix(output): label time-varying age-specific selectivity by year and age

  #1796·grantdadams opened Oct 1, 2026Contributor·4 tasks·

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  3

• fix(CatchAtAge): evaluate maturity by year

  #1795·grantdadams opened Oct 1, 2026Contributor·4 tasks·

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• feat(initialize_fims): warn when constant log_devs are in the process distribution

  #1794·grantdadams opened Oct 1, 2026Contributor·4 tasks·

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• feat(growth): average population weight-at-age over the length-at-age distribution

  #1791·grantdadams opened Sep 30, 2026Contributor·4 tasks·

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• fix(interface): include Rcpp through one header so wrong input types raise an R error

  #1790·grantdadams opened Sep 30, 2026Contributor·4 tasks·

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• Better explanation of fit output in function and vignette

  #1785·e-perl-NOAA opened Sep 30, 2026Collaborator·4 tasks·

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• feat(output): add ages and length bins to get_estimates()

  #1780·grantdadams opened Sep 30, 2026Contributor·4 tasks·

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• feat(output): report distribution parameters in get_estimates()

  #1771·grantdadams opened Sep 29, 2026Contributor·4 tasks·

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  18

• feat(convergence): name the parameters in convergence warnings

  #1768·grantdadams opened Sep 29, 2026Contributor·4 tasks·

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• fix(CatchAtAge): start unfished numbers at the equilibrium age structure

  #1759·grantdadams opened Sep 28, 2026Contributor·4 tasks·

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• fix(distributions): split multinomial row lpmf equally across bins

  #1754·grantdadams opened Sep 28, 2026Contributor·4 tasks·

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• fix(distributions): zero only the skipped multinomial row in lpdf_vec

  #1753·grantdadams opened Sep 28, 2026Contributor·4 tasks·

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• Refactor rcpp interface s4 to x ptr

  #1745·Andrea-Havron-NOAA opened Sep 24, 2026Collaborator·4 tasks·

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  16

• docs: plot age-to-length distributions across modeled ages

  kind: vignette
  #1735·awilnoaa opened Sep 11, 2026Contributor·4 tasks·

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  17

• Feature/derived quantity uncertainty

  #1713·msupernaw opened Aug 26, 2026Contributor·4 tasks·

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• Support TMB parameter maps

  #1706·msupernaw opened Aug 24, 2026Contributor·4 tasks·

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  20

• Refactor r tests

  #1674·Bai-Li-NOAA opened Jul 30, 2026Collaborator·4 tasks·

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  23

• Make fims::Vector out-of-bounds errors actionable with vector identity, index, and size

  #1667·Andrea-Havron-NOAA with CopilotAI opened Jul 28, 2026·

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