STED-EC

This GitHub repo provides reproduction code for key figures from "A Single-Cell Time-Series Atlas of Endothelial Cell Embryonic Development". The gene expression data (in .h5ad format) is available in the figshare repository (https://doi.org/10.6084/m9.figshare.30689990) and (https://ngdc.cncb.ac.cn/omix/release/OMIX007369).

Name		Name	Last commit message	Last commit date
BENGAL_scIB_pipeline		BENGAL_scIB_pipeline
DATA		DATA
DevEndo		DevEndo
Treesing		Treesing
envs		envs
ot_pairs		ot_pairs
1-atlas_overview.ipynb		1-atlas_overview.ipynb
2-celltype_annotation.ipynb		2-celltype_annotation.ipynb
3-maturity_score.ipynb		3-maturity_score.ipynb
4-mapping_public_datasets_to_EC_atlas.ipynb		4-mapping_public_datasets_to_EC_atlas.ipynb
5-cross-species_integration.ipynb		5-cross-species_integration.ipynb
6-trajetory_analysis.ipynb		6-trajetory_analysis.ipynb
7-cell-cell_communication.ipynb		7-cell-cell_communication.ipynb
8-Casz1-wt_cko_comparison.ipynb		8-Casz1-wt_cko_comparison.ipynb
README.md		README.md

Navigation Menu