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  • MRC CMM
  • 22:14 (UTC +01:00)

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Jack-Gregory-Bioinformatics/README.md
  • Hi, I’m @Jack-Gregory-Bioinformatics
  • I’m interested in fungal-bacterial bioinformatics and genetc engineering projects!
  • Currently learning how to apply and develop this skillset in regards to infectious fungal pathogens as part of my PhD program at the Medical Research Council's Centre for Medical Mycology
  • Further interests include genome plasticity, gene transfer and reorganisation between and within organisms, and extremophile biology

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  1. Endosymbiont_Hunting Endosymbiont_Hunting Public

    Repository for all code relating to the Mycetohabitans-Mucorales endosymbiosis paper

    Shell

  2. endoFUN-kraken2-db-builder endoFUN-kraken2-db-builder Public

    Reproducible workflow for building the EndoFUN Kraken2 database using NCBI Datasets, custom reference genomes, and Kraken2 standard libraries.

    Shell

  3. safe-haven-hunter safe-haven-hunter Public

    Safe Haven Hunter is a genome analysis and design tool for identifying and ranking genomic safe haven loci—regions suitable for targeted DNA insertion with minimal disruption to host biology.

    Python

  4. CryptoClassifier CryptoClassifier Public

    Repository for an automated microscopy image analysis pipeline (CryptoClassifier), using ImageJ.

    R 2