Huang Lab
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figure-extractor
figure-extractor PublicFlask-based service using PDFFigures 2.0 to extract figures and tables from scholarly PDFs. Features REST API, CLI, Docker support, and JSON metadata output (~1.5s/page processing). Designed for do…
Repositories
- AOU_research_primer Public
- germline-plp-carrier-nf Public
P/LP annotation (ClinVar, ACMG/AMP, calibrated AlphaMissense) and carrier identification nf pipeline
- TRACE-Kin Public
Graph neural network for predicting enzyme kinetic parameters (Km, kcat, Ki, Kd, kcat/Km) from protein sequence and ligand SMILES. The v7 architecture couples a GATv2 + global-attention structure stream to uncompressed protein-language-model embeddings via pocket-conditioned readout. Adapted from PSICHIC.
- VarCrawl Public
- lab-repo-template Public template
Best-practice backbone for Huang Lab repos: conventions, .gitignore, CI, hygiene and history scans, Python/R/Rust scaffolds
- Microglia_foundation_model Public
- cancer-gene-penetrance Public
Measures cancer-gene carrier penetrance by age and shows ClinVar under-confirms ACMG-pathogenic variants far more in non-European ancestries — with a reusable canonical-carrier-denominator method.
- biomarker-tracing Public Forked from Mustardburger/biomarker-tracing
Scripts for identifying significant cell types from proteomics summary statistics
- radr Public
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