Wonkyconn evaluates residual motion and analytic quality in group-level fMRI connectomes and creates visualization reports to compare the generated metrics.
The project is based on the code of SIMEXP/fmriprep-denoise-benchmark and the publication by Wang et al. 2024.
This project is in alpha stage! This is not a stable project yet.
Recommended container:
apptainer build wonkyconn-edge.sif docker://halfpipe/wonkyconn:edgeSee the documentation for usage, methods, and outputs.
- Install:
pip install "wonkyconn[textual] - Launch:
wonkyconn --textual - The CLI is required for headless batch jobs or multi-atlas runs.
Warning
- The textual UI requires an interactive terminal (TTY) if you are running Wonkyconn inside a non-interactive terminal (e.g., HPC batch job), use the CLI with
--textual. - Current GUI supports one atlas entry. Use the CLI for multi-atlas runs.