Issues

• pick silently deletes an entire superlocus when one locus is fully purged (--procs > 1)

  EI-CoreBioinformatics/mikado#483 · Filter by author gettl008 opened on Sep 2, 2026

• Prepping input for mikado

  EI-CoreBioinformatics/mikado#476 · Filter by author desmodus1984 opened on Feb 24, 2026
  5

• Error during mikado serialize

  EI-CoreBioinformatics/mikado#474 · Filter by author desmodus1984 opened on Jan 19, 2026
  10

• Setuptools v80.9.0 UserWarning: pkg_resources is deprecated as an API

  EI-CoreBioinformatics/mikado#471 · Filter by author gemygk opened on Dec 3, 2025

• OverflowError: value too large to convert to int

  EI-CoreBioinformatics/mikado#468 · Filter by author xiekunwhy opened on Jun 14, 2025
  1

• Struggling with Mikado installation

  EI-CoreBioinformatics/mikado#467 · Filter by author marcopessoa opened on Jun 13, 2025
  2

• Error in Mikado serialise: local variable 'counter' referenced before assignment

  EI-CoreBioinformatics/mikado#464 · Filter by author fjruizruano opened on Apr 28, 2025

• Remove Anaconda packages from defaults channel

  EI-CoreBioinformatics/mikado#462 · Filter by author gq1 opened on Feb 6, 2025
  1

• documentation :: some comments

  EI-CoreBioinformatics/mikado#461 · Filter by author EricDeveaud opened on Nov 21, 2024

• self_training.py :: missing scikit-learn

  EI-CoreBioinformatics/mikado#460 · Filter by author EricDeveaud opened on Nov 21, 2024

• ValueError and Invalid Target End Point Errors during Mikado Serialization

  EI-CoreBioinformatics/mikado#458 · Filter by author joseph144155 opened on Jul 17, 2024

• serialise load BLAST data error (Cannot use a compiled regex as replacement pattern with regex=False)

  EI-CoreBioinformatics/mikado#457 · Filter by author jolbi opened on Jun 13, 2024
  6

• Mikado pick does't add the CDS

  EI-CoreBioinformatics/mikado#455 · Filter by author francicco opened on May 24, 2024
  1

• Error in mikado conda

  EI-CoreBioinformatics/mikado#451 · Filter by author edugenetico opened on Apr 18, 2024

• Error with mikado serialise: 'Engine' object has no attribute 'cursor'

  EI-CoreBioinformatics/mikado#450 · Filter by author bbista opened on Feb 26, 2024
  10

• Error in rule asm_gff_stats

  EI-CoreBioinformatics/mikado#449 · Filter by author jwli-code opened on Jan 10, 2024

• can't install Mikado by different ways

  EI-CoreBioinformatics/mikado#448 · Filter by author mezoderma opened on Dec 8, 2023
  1

• Parameters to avoid overlap

  EI-CoreBioinformatics/mikado#447 · Filter by author xiekunwhy opened on Sep 28, 2023

• Unable to install mikado with mamba via multiple strategies

  EI-CoreBioinformatics/mikado#445 · Filter by author isaacvock opened on Sep 1, 2023
  4