rhtmlCombinedScatter

A htmlwidget that creates a scatterplot. Combines plotly and Displayr/rhtmlLabeledScatter to produce a scatterplot with optimally positioned labels.

Installation

To install from GitHub:

require(devtools)
install_github("Displayr/rhtmlCombinedScatter", dependencies = NA)

If you have not set up a GitHub Personal Access Token, you will likely need to do so to avoid GitHub rate limits, which will manifest as 403 errors when downloading packages via install_github. Please see the documentation in the usethis package or see the instructions here and here.

If you are using Windows, you will need to have a version of Rtools installed that matches your version of R in order to build packages from source. Rtools can be downloaded from here.

Specifying dependencies = NA in install_github will not install packages listed in Suggests in the DESCRIPTION file (some of which may be proprietary and unavailable for download).

Updating visual test baselines

The JS tests workflow runs automatically on every push. Its Visual regression tests job compares rendered output against the committed baselines in theSrc/test/snapshots/ci/master (CI always compares against master's baselines, whatever branch it is running on). The pixel threshold is 0.0001%, so any intended change to rendering, layout or label placement will turn the job red and the baselines have to be regenerated. A missing baseline also fails, rather than being silently accepted.

Baselines are environment specific — locally generated snapshots (npm run localTest, which writes to theSrc/test/snapshots/local/<branch>) will not match CI's fonts and Chromium build, so do not copy them into theSrc/test/snapshots/ci. Regenerate through CI instead:

1. Inspect the failure first. Download the snapshot-diffs artifact from the failed run and check the __diff_output__ images. Only regenerate once you are satisfied every diff is intended.
2. Dispatch a regeneration run. Actions → JS tests → Run workflow, select your branch, and tick update_snapshots. Optionally set test_filter (passed to jest -t) to regenerate only the tests matching a name pattern; leave it blank to regenerate all of them.
3. Download the regenerated-baselines artifact from that run. Its contents are rooted at master/, so extract it into theSrc/test/snapshots/ci/ — not over the repository root.
4. Review, commit and push the changed snapshots yourself. Use git status / git diff --stat to confirm only the snapshots you expected have changed.

Steps 2 and 3 can be done from the command line with the GitHub CLI instead of the Actions UI:

# Dispatch a regeneration run on the current branch (add -f test_filter=<pattern> to narrow it)
gh workflow run "JS tests" --ref "$(git rev-parse --abbrev-ref HEAD)" -f update_snapshots=true

# Get the run id, then follow it to completion
gh run list --workflow "JS tests" --event workflow_dispatch --limit 1
gh run watch <run-id>

# Extract the baselines straight into place -- the artifact is rooted at master/
gh run download <run-id> -n regenerated-baselines -D theSrc/test/snapshots/ci

# And the diffs from a failed comparison run, if you want them on disk
gh run download <run-id> -n snapshot-diffs -D .tmp/diffs

CI deliberately does not commit the baselines for you. A push made with the default GITHUB_TOKEN does not trigger any workflow, and workflow_dispatch check runs are excluded from a pull request's status rollup — so a bot-authored head commit would leave the PR reporting no checks. Pushing the snapshots yourself produces the full set of checks on the PR.

Submitting a bug report

If you encounter a problem using the package, please open an issue. To achieve a resolution as quickly as possible, please include a minimal, reproducible example of the bug, along with the exact error message or output you receive and the behavior you expect. Including the output of sessionInfo() in R can be helpful to reproduce the issue. Please see this FAQ, which has a number of useful tips on creating great reproducible examples.