Repository navigation

Bar scoring by divergence: per-row abPOA and per-pair pecan models, trained per pair of genomes (prototype) - #2024

Closed

glennhickey wants to merge 10 commits into

lastz-score-modelsfrom

Closed

Bar scoring by divergence: per-row abPOA and per-pair pecan models, trained per pair of genomes (prototype)#2024
glennhickey wants to merge 10 commits into
lastz-score-modelsfrom
bar-row-models

Commits on Oct 9, 2026
- last-train: lastdb -c and -C2, LAST's genome-genome recipe
  
  glennhickey
  and
  claude
  committed
  c1b24ea
- abPOA: per-read scoring parameters
  
  glennhickey
  and
  claude
  committed
  bc6777e
- bar: optional per-row abPOA scoring models, chosen by divergence
  
  glennhickey
  and
  claude
  committed
  c33b54c
- bar row models: under the ingroup rule, fall back to the nearest genome
  
  glennhickey
  and
  claude
  committed
  e287ea4
- bar: optional per-pair pecan models, chosen by divergence
  
  glennhickey
  and
  claude
  committed
  66e46eb
- bar: pin cPecan at its deterministic multiple aligner
  
  glennhickey
  and
  claude
  committed
  4a57b45
- bar: row and pair models for named pairs of genomes
  
  glennhickey
  and
  claude
  committed
  6b8eacf
- Score bar with the models the blast step trains per pair of genomes
  
  glennhickey
  and
  claude
  committed
  3f089e4
- bar: score with the trained models by default
  
  glennhickey
  and
  claude
  committed
  3651e76
- cactus-prepare: give cactus-align blast's trained models by option
  
  glennhickey
  and
  claude
  committed
  a3044b8