Update citation nature genetics

[Arvindiyer]

Summary

Adds the citation for the published Nature Genetics paper to the SelectSim repository.

Changes

• Updated README.md with the Nature Genetics paper citation.
• Added the recommended citation information for users of SelectSim.
• Removed tracked compiled object files from src/ and added appropriate ignore rules where needed.

Test plan

• devtools::document() run to regenerate NAMESPACE and manual pages.
• devtools::check() completed successfully.
• No package functionality was changed.
• No new tests were required because this update is documentation-only.
• README documentation updated with the published paper citation.

Additional notes

This pull request does not change package behavior or analysis results. It only updates the repository documentation to reference the published Nature Genetics article.

Summary by CodeRabbit

• Documentation
  • Updated citation information across the README and package citation metadata.
  • Added the finalized Nature Genetics publication details, including authors, year, and DOI.
  • Recorded the citation update in the release notes for version 0.1.6.

[coderabbitai]

📝 Walkthrough

Walkthrough

The change finalizes the Nature Genetics citation across package metadata, README files, and release notes, and updates .gitignore patterns for compiled artifacts under src/.

Changes

Publication citation updates

Layer / File(s)	Summary
Finalize package citation metadata inst/CITATION	Updates the author list, journal, year, DOI, DOI URL, and formatted citation text.
Synchronize citation documentation README.Rmd, README.md, NEWS.md	Replaces placeholder citation details with the finalized Nature Genetics publication and DOI.

Source artifact ignore rules

Layer / File(s)	Summary
Update compiled artifact patterns .gitignore	Adds patterns for compiled object and library artifacts and an accompanying unignore rule.

Estimated code review effort: 1 (Trivial) | ~5 minutes

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title matches the main change: updating citations to the Nature Genetics paper.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch update-citation-nature-genetics

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[coderabbitai]

Actionable comments posted: 1

🤖 Prompt for all review comments with AI agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In @.gitignore:
- Line 15: Correct the object-file ignore rule in .gitignore: replace the
negated nonexistent .githubsrc pattern with an ignore pattern for object files
under src/, using src/*.o or src/**/*.o if nested build outputs are possible.

🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

• Push a commit to this branch (recommended)
• Create a new PR with the fixes

---

ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: e3ac76fd-ddfd-4b25-abac-ed1a09d43d98

📥 Commits

Reviewing files that changed from the base of the PR and between 94fcabf and e139627.

⛔ Files ignored due to path filters (2)

• src/RcppExports.o is excluded by !**/*.o
• src/code.o is excluded by !**/*.o

📒 Files selected for processing (5)

• .gitignore
• NEWS.md
• README.Rmd
• README.md
• inst/CITATION

[coderabbitai]

🎯 Functional Correctness | 🟠 Major | ⚡ Quick win

Fix the object-file ignore pattern.

!/.githubsrc/*.o targets a nonexistent .githubsrc path and negates the rule instead of ignoring object files under src/. Consequently, src/*.o artifacts can still be committed.

-!/.githubsrc/*.o
+src/*.o

If nested build outputs are possible, use src/**/*.o instead.

📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change

	!/.githubsrc/*.o
	src/*.o

🤖 Prompt for AI Agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In @.gitignore at line 15, Correct the object-file ignore rule in .gitignore:
replace the negated nonexistent .githubsrc pattern with an ignore pattern for
object files under src/, using src/*.o or src/**/*.o if nested build outputs are
possible.