Name		Name	Last commit message	Last commit date
.github		.github
arriba/ccbr_arriba_2.0.0		arriba/ccbr_arriba_2.0.0
base_images		base_images
bbtools/ccbr_bbtools_38.87		bbtools/ccbr_bbtools_38.87
build/ccbr_build_rnaseq		build/ccbr_build_rnaseq
chipenrich		chipenrich
chipseeker/ccbr_chipseeker_1.42		chipseeker/ccbr_chipseeker_1.42
csaw/ccbr_csaw_v1.40.0		csaw/ccbr_csaw_v1.40.0
cutadapt		cutadapt
fastqc/ccbr_fastqc_0.11.9		fastqc/ccbr_fastqc_0.11.9
fastqscreen/ccbr_fastqscreen_v0.14.1		fastqscreen/ccbr_fastqscreen_v0.14.1
fastqvalidator/ccbr_fastqvalidator_0.1.1		fastqvalidator/ccbr_fastqvalidator_0.1.1
ichorCNA/ccbr_ichorcna_0.3.2		ichorCNA/ccbr_ichorcna_0.3.2
intervene/ccbr_intervene_0.6		intervene/ccbr_intervene_0.6
kraken/ccbr_kraken_2.1.1		kraken/ccbr_kraken_2.1.1
phylo/ccbr_r_phylo		phylo/ccbr_r_phylo
preseq/ccbr_preseq_v2.0		preseq/ccbr_preseq_v2.0
qualimap/ccbr_qualimap_2.2.1		qualimap/ccbr_qualimap_2.2.1
quarto/ccbr_quarto_1.6		quarto/ccbr_quarto_1.6
rose		rose
rsem/ccbr_rsem_1.3.1		rsem/ccbr_rsem_1.3.1
rseqc/ccbr_rseqc_4.0.0		rseqc/ccbr_rseqc_4.0.0
scripts		scripts
seurat/seurat_5		seurat/seurat_5
shiver/ccbr_shiver_1.7.3		shiver/ccbr_shiver_1.7.3
spac		spac
superFreq/ccbr_superfreq_1.6		superFreq/ccbr_superfreq_1.6
tests		tests
ucsc/ccbr_ucsc_v385		ucsc/ccbr_ucsc_v385
.gitignore		.gitignore
CHANGELOG.md		CHANGELOG.md
CITATION.cff		CITATION.cff
LICENSE		LICENSE
README.md		README.md
SECURITY.md		SECURITY.md
VERSION		VERSION