FAFBseg

Tools to work with manually generated and auto-segmented data in FAFB.

Documentation

FAFBseg is on readthedocs.

Quickstart

pip3 install git+git://github.com/flyconnectome/fafbseg-py.git

To update an existing installation run this:

pip3 install git+git://github.com/flyconnectome/fafbseg-py.git --upgrade

Requirements

You will need brainmaps API access. See brainmappy for details.

On top of that, you need to install below dependencies.

Dependencies

Make sure you have the most_recent version of the following libraries:

• pymaid: pip3 install git+git://github.com/schlegelp/pymaid@master
• brainmappy: pip3 install git+git://github.com/schlegelp/brainmappy@master
• inquirer: pip3 install inquirer
• iPython: pip3 install ipython