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Get the ground-truth annotation for the LARRY dataset (Fig. 4c) #15
Description
Activity
Hi Dr. Wang,
Thanks for this great work and sharing the dataset. After downloading the dataset using
cs.datasets.hematopoiesis(), I noticed that the number of cells is fewer than the number of cells in here. Did you filter out some of the cells based on certain criteria?you may use
cs.datasets.hematopoiesis_130K()to get all the data.cs.datasets.hematopoiesis()only contains cells with LARRY barcodes.Reacted by ZT
If you are interested to get the the annotation as in Fig. 4c, you can download cospar, and run
adata_orig=cs.datasets.hematopoiesis(), you will get the latest LARRY dataset, and it will include many fieldsparticularly,
adata.obs[''NeuMon_fate_bias'']is what you want. It will tell you the fate bias of each cell.