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Update dependency protobuf to v35 #103

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Run time

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Job	Run time
Bazel (bazel-example)	3m 21s
Tests (JDK 17)	7m 13s
Maven tests (JDK 17)	4m 33s
Maven tests (JDK 25)	4m 51s
Maven tests (JDK 21)	4m 58s
nix flake check	2m 20s
Bazel (scip-java)	3m 28s
Tests (JDK 21)	6m 29s
Tests (JDK 25)	7m 25s
Snapshots	3m 8s
bazel_aspect	5m 1s
	52m 47s