Issues

• the owning compartment of an EPN overlapping two compartments should be determined by rules given in the spec

  sbgn/process-descriptions#279 · Filter by author adrienrougny opened on Feb 4, 2026
  1

• Sentence in section 3.5.4 needs to be changed: "A complex may contain EPNs which belong to different compartments..."

  sbgn/process-descriptions#278 · Filter by author adrienrougny opened on Feb 4, 2026

• edge seem to be used interchangeably with arc, needs checking

  sbgn/process-descriptions#277 · Filter by author adrienrougny opened on Feb 4, 2026
  1

• Process description user manual is outdated

  sbgn/process-descriptions#276 · Filter by author rupertoverall opened on Dec 9, 2025

• wrong number of modulations in the intro of section 2.8

  sbgn/process-descriptions#275 · Filter by author adrienrougny opened on Oct 22, 2025

• Improve intro of logical operator nodes section

  sbgn/process-descriptions#274 · Filter by author hasanbalci opened on Oct 6, 2025

• homogenize the terms used to describe containers (complexes, compartments, submaps)

  sbgn/process-descriptions#273 · Filter by author adrienrougny opened on Jun 10, 2025
  1

• move layout rules in container text of logical operators to section 4

  sbgn/process-descriptions#272 · Filter by author adrienrougny opened on Jun 5, 2025

• Add protein lactylation as a post-translational modification

  sbgn/process-descriptions#271 · Filter by author cannin opened on May 20, 2025

• Fix outgoing arcs and container descriptions of and, or, not glyphs

  sbgn/process-descriptions#270 · Filter by author hasanbalci opened on Apr 29, 2025 · L2+

• Remove explanation at Section 2.12

  sbgn/process-descriptions#268 · Filter by author hasanbalci opened on Apr 17, 2025 · L2+

• Fix figure 2.57

  sbgn/process-descriptions#267 · Filter by author hasanbalci opened on Apr 17, 2025 · L2+

• no particular symbol is used instead of no symbol for some arcs

  bugspec editing
  sbgn/process-descriptions#266 · Filter by author adrienrougny opened on Apr 16, 2025

• introduce structure of the spec in the introduction

  enhancementspec editing
  sbgn/process-descriptions#265 · Filter by author adrienrougny opened on Apr 16, 2025

• "origin" should be changed to "source" in the description of arcs

  enhancementspec editing
  sbgn/process-descriptions#264 · Filter by author adrienrougny opened on Apr 16, 2025 · L2+

• make compartment containment imply compartment membership

  feature
  sbgn/process-descriptions#263 · Filter by author adrienrougny opened on Feb 6, 2025 · L2+

• make clearer definitions of the terms glyph/node/arc/edge and what glyphs belong to these categories

  enhancementspec editing
  sbgn/process-descriptions#262 · Filter by author adrienrougny opened on Jan 31, 2025 · L2+

• Wrong compartment name in figure

  bugeasy-to-fix
  sbgn/process-descriptions#261 · Filter by author hasanbalci opened on Dec 16, 2024 · L2+

• Figures in Appendix A

  bugspec editing
  sbgn/process-descriptions#260 · Filter by author hasanbalci opened on Dec 5, 2024 · L2+

• Duplication rules table contains unnecessary rows

  bugspec editing
  sbgn/process-descriptions#259 · Filter by author hasanbalci opened on Dec 5, 2024 · L2+

• the name "equivalence operator" is misleading

  bug
  sbgn/process-descriptions#258 · Filter by author adrienrougny opened on Nov 22, 2024 · L2+

• the equivalence operator should not be a logical operator

  bugspec editing
  sbgn/process-descriptions#257 · Filter by author adrienrougny opened on Nov 22, 2024 · L2+

• Adding a new rule "The subunit defines a namespace for its state variables"

  spec editing
  sbgn/process-descriptions#255 · Filter by author hasanbalci opened on Nov 21, 2024 · L2+

• Eliminate or reconsider the concept of clone markers in SBGN

  feature
  sbgn/process-descriptions#248 · Filter by author draeger opened on Jul 18, 2024 · L2+

• remove multimers

  feature
  sbgn/process-descriptions#242 · Filter by author adrienrougny opened on Apr 11, 2024 · L2+