docs: Update projects #13
Workflow file for this run
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| # SPDX-FileCopyrightText: 2026 The RISE Project | |
| # SPDX-License-Identifier: MIT | |
| --- | |
| # Based on upstream's own wheel and test workflows: | |
| # https://github.com/zqfang/GSEApy/blob/v1.3.1/.github/workflows/wheels.yml | |
| # https://github.com/zqfang/GSEApy/blob/v1.3.1/.github/workflows/test.yml | |
| name: Build gseapy wheels (riscv64) | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| version: | |
| description: 'Version glob to (re)build; empty builds every version of docs/packages/gseapy.yaml not released yet' | |
| required: false | |
| default: '' | |
| pull_request: | |
| branches: [main] | |
| paths: | |
| - '.github/workflows/build-gseapy.yml' | |
| - 'docs/packages/gseapy.yaml' | |
| push: | |
| branches: [main] | |
| paths: | |
| - '.github/workflows/build-gseapy.yml' | |
| - 'docs/packages/gseapy.yaml' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| env: | |
| MANYLINUX_RISCV64_IMAGE: quay.io/pypa/manylinux_2_39_riscv64 | |
| jobs: | |
| setup: | |
| uses: $/.github/workflows/_setup.yml | |
| with: | |
| package: gseapy | |
| version: ${{ inputs.version }} | |
| build_wheels: | |
| needs: [setup] | |
| if: needs.setup.outputs.versions != '[]' | |
| name: Build gseapy ${{ matrix.version }} ${{ matrix.python }}-manylinux_riscv64 | |
| runs-on: ubuntu-24.04-riscv | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: ${{ fromJSON(needs.setup.outputs.versions) }} | |
| python: ["cp312", "cp313", "cp314", "cp314t"] | |
| include: | |
| # pandas, a hard runtime dependency, has no cp314t riscv64 wheel on pypi.riseproject.dev. | |
| - python: "cp314t" | |
| test_skip: "*" | |
| env: | |
| GSEAPY_VERSION: ${{ matrix.version }} | |
| steps: | |
| - name: Checkout gseapy v${{ env.GSEAPY_VERSION }} | |
| uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 | |
| with: | |
| repository: zqfang/GSEApy | |
| ref: v${{ env.GSEAPY_VERSION }} | |
| persist-credentials: false | |
| - name: Build wheels | |
| uses: pypa/cibuildwheel@1828c10ab37f080699c7b81cea34097c684a7074 # v4.2.0 | |
| with: | |
| output-dir: wheelhouse/ | |
| only: ${{ matrix.python }}-manylinux_riscv64 | |
| env: | |
| CIBW_MANYLINUX_RISCV64_IMAGE: ${{ env.MANYLINUX_RISCV64_IMAGE }} | |
| CIBW_BEFORE_ALL_LINUX: >- | |
| yum install libatomic -y && | |
| curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y | |
| CIBW_ENVIRONMENT_LINUX: >- | |
| PATH="$PATH:$HOME/.cargo/bin" | |
| PIP_EXTRA_INDEX_URL=https://pypi.riseproject.dev/simple/ | |
| PIP_ONLY_BINARY=numpy,scipy,pandas,matplotlib,contourpy,kiwisolver,pillow,fonttools,lxml,pyyaml | |
| CIBW_BEFORE_BUILD: >- | |
| python -m pip install -U pip setuptools wheel build setuptools-rust | |
| CIBW_TEST_EXTRAS: test | |
| CIBW_TEST_SOURCES: tests pyproject.toml | |
| CIBW_TEST_COMMAND: pytest tests | |
| CIBW_TEST_SKIP: ${{ matrix.test_skip }} | |
| - name: Check the Rust extension is in the wheel | |
| run: python3 -m zipfile -l wheelhouse/*.whl | grep -E 'gseapy/gse\..*\.so' | |
| - uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1 | |
| with: | |
| name: gseapy-${{ env.GSEAPY_VERSION }}-${{ matrix.python }}-manylinux_riscv64 | |
| path: wheelhouse/*.whl | |
| if-no-files-found: error | |
| publish: | |
| name: Publish gseapy ${{ matrix.version }} | |
| needs: [setup, build_wheels] | |
| if: needs.setup.outputs.versions != '[]' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: ${{ fromJSON(needs.setup.outputs.versions) }} | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| uses: $/.github/workflows/_publish-wheel.yml | |
| secrets: | |
| app-private-key: ${{ secrets.RISEPROJECT_APP_PRIVATE_KEY }} | |
| with: | |
| artifact-pattern: gseapy-${{ matrix.version }}-*-manylinux_riscv64 |