From a5ff2384f5c2e7d162f404df235786ec02792ac7 Mon Sep 17 00:00:00 2001 From: "scala-steward-projectglow[bot]" <159218053+scala-steward-projectglow[bot]@users.noreply.github.com> Date: Sun, 28 Jun 2026 00:39:06 +0000 Subject: [PATCH] Update picard to 3.4.0 --- build.sbt | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/build.sbt b/build.sbt index 882fdec5..4d5837ed 100644 --- a/build.sbt +++ b/build.sbt @@ -122,7 +122,10 @@ lazy val commonSettings = Seq( assembly / assemblyMergeStrategy := { case p if p.toLowerCase.contains("manifest.mf") => MergeStrategy.discard - case p if p.toLowerCase.endsWith(".sf") || p.toLowerCase.endsWith(".dsa") || p.toLowerCase.endsWith(".rsa") => + case p + if p.toLowerCase.endsWith(".sf") || p.toLowerCase.endsWith(".dsa") || p + .toLowerCase + .endsWith(".rsa") => MergeStrategy.discard case p if p.startsWith("com/fasterxml/jackson/") => MergeStrategy.discard @@ -140,7 +143,7 @@ lazy val commonSettings = Seq( if (sparkVersion.value.contains("SNAPSHOT")) Seq("Apache Snapshots" at "https://repository.apache.org/snapshots/") else Seq.empty - }, + } ) lazy val functionsYml = settingKey[File]("functionsYml") @@ -215,7 +218,7 @@ ThisBuild / coreDependencies := { "org.seqdoop" % "hadoop-bam" % "7.10.0", "org.slf4j" % "slf4j-api" % "2.0.12", "org.jdbi" % "jdbi" % "2.78", - "com.github.broadinstitute" % "picard" % "2.27.5", + "com.github.broadinstitute" % "picard" % "3.4.0", "org.apache.commons" % "commons-lang3" % "3.14.0", // Fix versions of libraries that are depended on multiple times "org.apache.hadoop" % "hadoop-client" % hadoopVersion,